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The map label for this gene is yodE

Identifier: 16079015

GI number: 16079015

Start: 2129082

End: 2129993

Strand: Reverse

Name: yodE

Synonym: BSU19570

Alternate gene names: 16079015

Gene position: 2129993-2129082 (Counterclockwise)

Preceding gene: 16079017

Following gene: 16079014

Centisome position: 50.53

GC content: 45.29

Gene sequence:

>912_bases
ATGAAAACAGAAGGATTGCACCATGTCACAGCATTCGCCAGAGATCCGCAAGAAAACTTGCGATTTTATACAGAAGTGCT
TGGGCTCAGGCTCGTTAAAAAAACAGTAAACTTTGATGATCCCGGAACGTATCATTTTTACTTTGGGAATCAAAACGGAG
ATCCCGGTACAATAATGACCTTTTTTCCGTTCCAAGGAAGCGGACAGGGAACGGTAGGAAAAGGCCAAGCGGGCCGGGTG
TACTTTTCAGTTCCCTCAGGCTCCCTGTCTTTTTGGAAGGAACGTCTTGAGAAAAGCGGGCTGAGCCTAGAGGAAAAAAC
GTTGTTTGGTGAAAAAGGTCTTATTTTTGATGATACAGAAGACCTTCCGCTGGCGATCATGGAGGATGCGAAAAGCGGCA
AAAGCGAGTGGACGCCTGACGGGATCACAACAAATGAAGCAATTACGGGAATGAAAGGTGTGCTGCTATATTCCTACGAC
CCGCAGGCGACCATACAATTGTTAACGGAAAGCTTTGGATACACCAAAGTGGCCGAAGAAGACCAGATTGTCAGACTGGC
ATCTTCAGCGGCGGTCGGCGGTGTCATTGATGTCCATTTACATCCTGAAAAAAGAGGAGTCGGAGGATATGGTACGGTAC
ACCATGTAGCGTTTCGGACTAAGAAAAAGGAACAGGCGAAATGGCTGCCGATTATTGCTGAAAACCATCTGCCTTCGTCA
GAAATTCTCGACAGGGAATACTTTACATCAGTTTATTTTAGGGAGAAAGGCGGTATCTTATTTGAAATTGCCACAGATGA
ACCGGGCTTTATGACAGATGAAACGTTTGCTGAGCTAGGGACTTCCTTAAAACTGCCTGAATGGCTGGAGAAACATAGAC
AACAAATTACAGACATTTTACCTGAACTTTAA

Upstream 100 bases:

>100_bases
ATTTTTTCAATTATTTAATCAAAACACATGGTTTGCATCCTTTTCAATAAAGGTTTAAAATAATAAATATCTTGAAATCG
AGATAAATAGGAGTGAGAAA

Downstream 100 bases:

>100_bases
AAGGGGGAATTTATAATGAAGCATATTTATGAGAAAGGAACATCTGACAACGTACTTTTGCTGTTGCATGGCACGGGTGG
TAATGAACACGATCTGCTTT

Product: lyase/dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKTEGLHHVTAFARDPQENLRFYTEVLGLRLVKKTVNFDDPGTYHFYFGNQNGDPGTIMTFFPFQGSGQGTVGKGQAGRV
YFSVPSGSLSFWKERLEKSGLSLEEKTLFGEKGLIFDDTEDLPLAIMEDAKSGKSEWTPDGITTNEAITGMKGVLLYSYD
PQATIQLLTESFGYTKVAEEDQIVRLASSAAVGGVIDVHLHPEKRGVGGYGTVHHVAFRTKKKEQAKWLPIIAENHLPSS
EILDREYFTSVYFREKGGILFEIATDEPGFMTDETFAELGTSLKLPEWLEKHRQQITDILPEL

Sequences:

>Translated_303_residues
MKTEGLHHVTAFARDPQENLRFYTEVLGLRLVKKTVNFDDPGTYHFYFGNQNGDPGTIMTFFPFQGSGQGTVGKGQAGRV
YFSVPSGSLSFWKERLEKSGLSLEEKTLFGEKGLIFDDTEDLPLAIMEDAKSGKSEWTPDGITTNEAITGMKGVLLYSYD
PQATIQLLTESFGYTKVAEEDQIVRLASSAAVGGVIDVHLHPEKRGVGGYGTVHHVAFRTKKKEQAKWLPIIAENHLPSS
EILDREYFTSVYFREKGGILFEIATDEPGFMTDETFAELGTSLKLPEWLEKHRQQITDILPEL
>Mature_303_residues
MKTEGLHHVTAFARDPQENLRFYTEVLGLRLVKKTVNFDDPGTYHFYFGNQNGDPGTIMTFFPFQGSGQGTVGKGQAGRV
YFSVPSGSLSFWKERLEKSGLSLEEKTLFGEKGLIFDDTEDLPLAIMEDAKSGKSEWTPDGITTNEAITGMKGVLLYSYD
PQATIQLLTESFGYTKVAEEDQIVRLASSAAVGGVIDVHLHPEKRGVGGYGTVHHVAFRTKKKEQAKWLPIIAENHLPSS
EILDREYFTSVYFREKGGILFEIATDEPGFMTDETFAELGTSLKLPEWLEKHRQQITDILPEL

Specific function: Putative ring-cleavage dioxygenase that may contribute to the degradation of aromatic compounds (Potential)

COG id: COG0346

COG function: function code E; Lactoylglutathione lyase and related lyases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the extradiol ring-cleavage dioxygenase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MHQE_BACSU (O34543)

Other databases:

- EMBL:   AF015775
- EMBL:   AL009126
- PIR:   B69903
- RefSeq:   NP_389838.1
- HSSP:   Q81H03
- ProteinModelPortal:   O34543
- SMR:   O34543
- EnsemblBacteria:   EBBACT00000000366
- GeneID:   940022
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19570
- NMPDR:   fig|224308.1.peg.1961
- GenoList:   BSU19570
- GeneTree:   EBGT00050000001339
- HOGENOM:   HBG323583
- OMA:   LPLAIME
- ProtClustDB:   CLSK887428
- BioCyc:   BSUB:BSU19570-MONOMER
- GO:   GO:0005737
- InterPro:   IPR000595
- InterPro:   IPR004360

Pfam domain/function: PF00903 Glyoxalase

EC number: NA

Molecular weight: Translated: 33852; Mature: 33852

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00082 EXTRADIOL_DIOXYGENAS; PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEGLHHVTAFARDPQENLRFYTEVLGLRLVKKTVNFDDPGTYHFYFGNQNGDPGTIMT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEE
FFPFQGSGQGTVGKGQAGRVYFSVPSGSLSFWKERLEKSGLSLEEKTLFGEKGLIFDDTE
EEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHEECCCCCEECCCC
DLPLAIMEDAKSGKSEWTPDGITTNEAITGMKGVLLYSYDPQATIQLLTESFGYTKVAEE
CCCCCEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEECCC
DQIVRLASSAAVGGVIDVHLHPEKRGVGGYGTVHHVAFRTKKKEQAKWLPIIAENHLPSS
CHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCHHCCCCCEEEECCCCCHH
EILDREYFTSVYFREKGGILFEIATDEPGFMTDETFAELGTSLKLPEWLEKHRQQITDIL
HHHHHHHHHHEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
PEL
CCC
>Mature Secondary Structure
MKTEGLHHVTAFARDPQENLRFYTEVLGLRLVKKTVNFDDPGTYHFYFGNQNGDPGTIMT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEE
FFPFQGSGQGTVGKGQAGRVYFSVPSGSLSFWKERLEKSGLSLEEKTLFGEKGLIFDDTE
EEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHEECCCCCEECCCC
DLPLAIMEDAKSGKSEWTPDGITTNEAITGMKGVLLYSYDPQATIQLLTESFGYTKVAEE
CCCCCEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEECCC
DQIVRLASSAAVGGVIDVHLHPEKRGVGGYGTVHHVAFRTKKKEQAKWLPIIAENHLPSS
CHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCHHCCCCCEEEECCCCCHH
EILDREYFTSVYFREKGGILFEIATDEPGFMTDETFAELGTSLKLPEWLEKHRQQITDIL
HHHHHHHHHHEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
PEL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377