Click here to switch to the map view.

The map label for this gene is yodD

Identifier: 16079014

GI number: 16079014

Start: 2128464

End: 2129066

Strand: Reverse

Name: yodD

Synonym: BSU19560

Alternate gene names: 16079014

Gene position: 2129066-2128464 (Counterclockwise)

Preceding gene: 16079015

Following gene: 16079012

Centisome position: 50.5

GC content: 47.6

Gene sequence:

>603_bases
ATGAAGCATATTTATGAGAAAGGAACATCTGACAACGTACTTTTGCTGTTGCATGGCACGGGTGGTAATGAACACGATCT
GCTTTCATTGGGGCGGTTTATAGACCCTGATGCCCATTTGCTTGGTGTCAGAGGATCGGTGCTTGAAAATGGAATGCCGC
GATTTTTCAAACGTCTGAGTGAAGGAGTTTTTGATGAAAAGGATCTTGTGGTGCGGACAAGAGAATTGAAAGATTTTATC
GACGAGGCTGCAGAAACGCATCAGTTTAATCGCGGCCGAGTGATTGCAGTCGGTTATTCAAACGGCGCAAACATTGCGGC
AAGCCTGCTTTTTCATTATAAAGATGTGTTAAAAGGGGCTATTCTGCATCATCCAATGGTTCCGATTCGGGGTATCGAGC
TGCCTGATATGGCGGGGCTCCCTGTTTTTATCGGTGCCGGGAAATACGATCCTCTTTGCACGAAGGAAGAATCAGAAGAG
CTTTACCGCTATTTGCGTGACAGCGGGGCATCAGCCTCCGTTTACTGGCAGGACGGGGGCCATCAGCTGACTCAGCATGA
AGCTGAACAGGCTCGTGAATGGTACAAAGAGGCGATTGTATAA

Upstream 100 bases:

>100_bases
TGCTGAGCTAGGGACTTCCTTAAAACTGCCTGAATGGCTGGAGAAACATAGACAACAAATTACAGACATTTTACCTGAAC
TTTAAAAGGGGGAATTTATA

Downstream 100 bases:

>100_bases
AAAAACCTTAGTCCGGATTTCGGACTAAGGTTTTTCATATCCTTACAGCCAAGTTGATACTTTTGAAAGCGGCAGACGGT
TGCTTTGATGCGCAGGCTTC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKHIYEKGTSDNVLLLLHGTGGNEHDLLSLGRFIDPDAHLLGVRGSVLENGMPRFFKRLSEGVFDEKDLVVRTRELKDFI
DEAAETHQFNRGRVIAVGYSNGANIAASLLFHYKDVLKGAILHHPMVPIRGIELPDMAGLPVFIGAGKYDPLCTKEESEE
LYRYLRDSGASASVYWQDGGHQLTQHEAEQAREWYKEAIV

Sequences:

>Translated_200_residues
MKHIYEKGTSDNVLLLLHGTGGNEHDLLSLGRFIDPDAHLLGVRGSVLENGMPRFFKRLSEGVFDEKDLVVRTRELKDFI
DEAAETHQFNRGRVIAVGYSNGANIAASLLFHYKDVLKGAILHHPMVPIRGIELPDMAGLPVFIGAGKYDPLCTKEESEE
LYRYLRDSGASASVYWQDGGHQLTQHEAEQAREWYKEAIV
>Mature_200_residues
MKHIYEKGTSDNVLLLLHGTGGNEHDLLSLGRFIDPDAHLLGVRGSVLENGMPRFFKRLSEGVFDEKDLVVRTRELKDFI
DEAAETHQFNRGRVIAVGYSNGANIAASLLFHYKDVLKGAILHHPMVPIRGIELPDMAGLPVFIGAGKYDPLCTKEESEE
LYRYLRDSGASASVYWQDGGHQLTQHEAEQAREWYKEAIV

Specific function: Putative hydrolase that may contribute to the degradation of aromatic compounds (Potential)

COG id: COG0400

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MHQD_BACSU (O34842)

Other databases:

- EMBL:   AF015775
- EMBL:   AF006665
- EMBL:   AL009126
- PIR:   A69903
- RefSeq:   NP_389837.1
- ProteinModelPortal:   O34842
- SMR:   O34842
- EnsemblBacteria:   EBBACT00000003658
- GeneID:   940106
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19560
- NMPDR:   fig|224308.1.peg.1960
- GenoList:   BSU19560
- GeneTree:   EBGT00050000002546
- HOGENOM:   HBG651281
- OMA:   IAVGYSN
- ProtClustDB:   CLSK873246
- BioCyc:   BSUB:BSU19560-MONOMER
- GO:   GO:0005737
- InterPro:   IPR003140

Pfam domain/function: PF02230 Abhydrolase_2

EC number: NA

Molecular weight: Translated: 22433; Mature: 22433

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: ACT_SITE 100-100 ACT_SITE 150-150 ACT_SITE 181-181

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHIYEKGTSDNVLLLLHGTGGNEHDLLSLGRFIDPDAHLLGVRGSVLENGMPRFFKRLS
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHCCHHHHHHHHH
EGVFDEKDLVVRTRELKDFIDEAAETHQFNRGRVIAVGYSNGANIAASLLFHYKDVLKGA
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ILHHPMVPIRGIELPDMAGLPVFIGAGKYDPLCTKEESEELYRYLRDSGASASVYWQDGG
HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
HQLTQHEAEQAREWYKEAIV
CCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKHIYEKGTSDNVLLLLHGTGGNEHDLLSLGRFIDPDAHLLGVRGSVLENGMPRFFKRLS
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHCCHHHHHHHHH
EGVFDEKDLVVRTRELKDFIDEAAETHQFNRGRVIAVGYSNGANIAASLLFHYKDVLKGA
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ILHHPMVPIRGIELPDMAGLPVFIGAGKYDPLCTKEESEELYRYLRDSGASASVYWQDGG
HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
HQLTQHEAEQAREWYKEAIV
CCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377