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The map label for this gene is yodB

Identifier: 16079012

GI number: 16079012

Start: 2127345

End: 2127683

Strand: Reverse

Name: yodB

Synonym: BSU19540

Alternate gene names: 16079012

Gene position: 2127683-2127345 (Counterclockwise)

Preceding gene: 16079014

Following gene: 16079010

Centisome position: 50.47

GC content: 46.02

Gene sequence:

>339_bases
ATGGGAAATACGATGTGCCCTAAAATGGAATCCGCATTCTCATTGCTGGGAAAACGATGGAACGGTCTGATCATCCATGT
GCTAATGGATGGGCCGAAACGGTTTAAAGAGATAACGGAAACAATACCGATGATCAGCCAAAAAATGTTGGCAGAGCGCT
TGAAGGAGCTTGAACAAAACGAGATTGTCGAACGGCAGGTTCTCCCTGAAACGCCGGTCAAAGTCATCTACACGCTGACT
GAAAAAGGAACAGCGCTTCAAGCTGTATTTCAAGAAATGCAGGCATGGGCCGATCAATTTTGCGAGCCTGGTGACACAGT
GTGTGAAGAAGAGAAATAA

Upstream 100 bases:

>100_bases
TGATAATAGAAAAGTTAGAAGCTTACTAAATGTAACTTGAAAGATTATTGTAATGGATCATTGAATACATGTCAATCAAT
AGATGAAGGGATGAAGACTT

Downstream 100 bases:

>100_bases
GGAAAGCGGCACCTGAAAAAGAGCCTTTGTTTCCATGGTGAGTCATGTAAGTACGGTTCACACCCGTTTACATGACTTTT
TATATTTGTCAGACTGATAT

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MGNTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQNEIVERQVLPETPVKVIYTLT
EKGTALQAVFQEMQAWADQFCEPGDTVCEEEK

Sequences:

>Translated_112_residues
MGNTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQNEIVERQVLPETPVKVIYTLT
EKGTALQAVFQEMQAWADQFCEPGDTVCEEEK
>Mature_111_residues
GNTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQNEIVERQVLPETPVKVIYTLTE
KGTALQAVFQEMQAWADQFCEPGDTVCEEEK

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODB_BACSU (O34844)

Other databases:

- EMBL:   AF006665
- EMBL:   AF015775
- EMBL:   AL009126
- PIR:   G69902
- RefSeq:   NP_389835.1
- ProteinModelPortal:   O34844
- SMR:   O34844
- EnsemblBacteria:   EBBACT00000001480
- GeneID:   939449
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19540
- NMPDR:   fig|224308.1.peg.1958
- GenoList:   BSU19540
- GeneTree:   EBGT00070000031997
- HOGENOM:   HBG752497
- OMA:   GPKRFKD
- ProtClustDB:   CLSK887427
- BioCyc:   BSUB:BSU19540-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 12846; Mature: 12715

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQN
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVERQVLPETPVKVIYTLTEKGTALQAVFQEMQAWADQFCEPGDTVCEEEK
HHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GNTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQN
CCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVERQVLPETPVKVIYTLTEKGTALQAVFQEMQAWADQFCEPGDTVCEEEK
HHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377