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The map label for this gene is xynD

Identifier: 16078877

GI number: 16078877

Start: 1944113

End: 1945654

Strand: Reverse

Name: xynD

Synonym: BSU18160

Alternate gene names: 16078877

Gene position: 1945654-1944113 (Counterclockwise)

Preceding gene: 16078881

Following gene: 16078876

Centisome position: 46.15

GC content: 46.43

Gene sequence:

>1542_bases
ATGAGGAAAAAGTGTAGCGTATGTTTATGGATTCTAGTTTTATTATTGAGCTGCTTATCTGGGAAGTCTGCGTATGCTGC
CACTAGTACTACAATTGCAAAACATATAGGGAATTCAAATCCGCTTATCGACCATCATTTGGGAGCGGATCCGGTTGCGC
TGACCTATAACGGAAGAGTCTACATCTATATGTCAAGTGATGACTATGAATATAATAGCAACGGAACAATTAAAGATAAT
TCATTTGCCAATTTGAATAGAGTATTCGTCATATCTTCAGCGGATATGGTGAACTGGACAGACCACGGAGCCATTCCGGT
AGCAGGTGCCAATGGAGCTAATGGAGGCCGTGGAATTGCAAAATGGGCAGGTGCGTCATGGGCACCGTCAATCGCAGTTA
AAAAAATTAATGGCAAGGATAAATTCTTCCTTTATTTCGCAAACAGCGGCGGAGGTATCGGGGTTCTCACCGCAGACAGC
CCGATTGGTCCATGGACCGACCCAATCGGAAAACCGCTCGTAACGCCAAGTACGCCAGGAATGTCTGGTGTTGTATGGCT
TTTTGATCCGGCAGTATTTGTAGATGACGACGGAACCGGTTACCTGTATGCCGGCGGAGGCGTTCCTGGCGTTTCAAATC
CAACGCAGGGACAATGGGCCAATCCTAAAACGGCTAGAGTCATAAAATTGGGGCCTGATATGACGAGTGTTGTTGGAAGT
GCATCTACAATTGATGCGCCTTTCATGTTTGAAGATTCGGGATTGCACAAGTATAACGGAACATATTATTACTCCTATTG
CATCAATTTCGGCGGCACGCACCCGGCCGATAAACCCCCGGGTGAGATCGGCTACATGACCAGTTCAAGTCCCATGGGTC
CCTTTACATATAGAGGGCACTTCCTGAAAAATCCGGGTGCATTTTTCGGAGGTGGCGGAAACAACCATCATGCTGTTTTC
AATTTTAAAAACGAGTGGTATGTGGTGTACCATGCGCAAACTGTCAGTTCCGCTCTGTTCGGGGCCGGCAAAGGATACCG
CTCTCCCCATATTAATAAGCTGGTGCATAATGCAGATGGATCTATTCAAGAGGTAGCGGCAAATTATGCAGGTGTAACAC
AAATTTCCAATTTAAACCCATATAACCGGGTAGAAGCTGAAACGTTTGCTTGGAATGGACGCATTTTGACAGAGAAGTCC
ACAGCACCCGGCGGGCCAGTAAATAATCAGCATGTAACAAGCATTCAAAATGGAGACTGGATTGCTGTAGGAAATGCAGA
CTTCGGAGCGGGCGGTGCCAGGTCATTTAAAGCAAATGTAGCATCCACTTTAGGCGGGAAAATAGAAGTGCGCCTCGACA
GTGCAGACGGTAAGCTTGTTGGAACTCTGAATGTGCCTTCAACAGGCGGAGCGCAAACGTGGAGGGAAATAGAAACTGCG
GTAAGCGGGGCAACCGGTGTGCACAAAGTATTCTTTGTATTTACCGGAACAGGTACAGGAAACTTGTTTAATTTTGATTA
CTGGCAGTTTACGCAAAGATAG

Upstream 100 bases:

>100_bases
ACAGCTTCCGGCTACTTTATGCGTGCAATCTTCGTGACCTGTTGTTATCAAATTCCAAAAGAAAATCCCCCATTTTAAGG
AAAAAGGAGGATGTGAAGTG

Downstream 100 bases:

>100_bases
TACTCGTAATGGGACCGCTTAAAAACGAGGCGGGTGAAGTACGGGCCAGCACCGGAACAGCCCGCCATTATGGATATGCC
ATGCAGATTTTTTAATACCG

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDN
SFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADS
PIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS
ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVF
NFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKS
TAPGGPVNNQHVTSIQNGDWIAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETA
VSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR

Sequences:

>Translated_513_residues
MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDN
SFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADS
PIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS
ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVF
NFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKS
TAPGGPVNNQHVTSIQNGDWIAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETA
VSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR
>Mature_513_residues
MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDN
SFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADS
PIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS
ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVF
NFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKS
TAPGGPVNNQHVTSIQNGDWIAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETA
VSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XYND_BACSU (Q45071)

Other databases:

- EMBL:   AL009126
- PIR:   H69735
- RefSeq:   NP_389698.1
- PDB:   3C7E
- PDB:   3C7F
- PDB:   3C7G
- PDB:   3C7H
- PDB:   3C7O
- PDBsum:   3C7E
- PDBsum:   3C7F
- PDBsum:   3C7G
- PDBsum:   3C7H
- PDBsum:   3C7O
- ProteinModelPortal:   Q45071
- SMR:   Q45071
- EnsemblBacteria:   EBBACT00000001998
- GeneID:   936433
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18160
- NMPDR:   fig|224308.1.peg.1819
- GenoList:   BSU18160
- GeneTree:   EBGT00050000001234
- HOGENOM:   HBG585375
- OMA:   NGDWIAV
- ProtClustDB:   CLSK865478
- BioCyc:   BSUB:BSU18160-MONOMER
- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710
- PANTHER:   PTHR22925
- SMART:   SM00606

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43; SSF49785 Gal_bind_like

EC number: =3.2.1.55

Molecular weight: Translated: 54498; Mature: 54498

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS51175 CBM6; PS00013 PROKAR_LIPOPROTEIN

Important sites: ACT_SITE 50-50 ACT_SITE 251-251 BINDING 314-314

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRV
CCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCEEEECCCCCCEEEEECCEE
YIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIA
EEEECCCCCEECCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCEEEECCCCCCCCCCHH
KWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPG
HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEECCCCCC
MSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS
CCEEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCC
ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGH
CCCCCCCEEEECCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCE
FLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADG
EECCCCCEECCCCCCCEEEEEECCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
SIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDW
CHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCE
IAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETA
EEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
VSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR
HCCCCCCEEEEEEEECCCCCCEEECCCEEEECC
>Mature Secondary Structure
MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRV
CCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCEEEECCCCCCEEEEECCEE
YIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIA
EEEECCCCCEECCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCEEEECCCCCCCCCCHH
KWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPG
HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEECCCCCC
MSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS
CCEEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCC
ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGH
CCCCCCCEEEECCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCE
FLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADG
EECCCCCEECCCCCCCEEEEEECCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
SIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDW
CHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCE
IAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETA
EEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
VSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR
HCCCCCCEEEEEEEECCCCCCEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 10658653