Click here to switch to the map view.

The map label for this gene is yngD

Identifier: 16078881

GI number: 16078881

Start: 1948313

End: 1949512

Strand: Reverse

Name: yngD

Synonym: BSU18200

Alternate gene names: 16078881

Gene position: 1949512-1948313 (Counterclockwise)

Preceding gene: 255767426

Following gene: 16078877

Centisome position: 46.25

GC content: 44.17

Gene sequence:

>1200_bases
ATGTATCATTTATATTCACATAACGACTTGGACGGAGTAGGATGCGGAATCGTAGCAAAATTGGCGTTCGGAAAAGACGT
AGAGATCCGGTATAACTCTGTCAACGGCTTAAACGCACAGGTGCAGTACTTTTTAGAAAAAGCGAAGGAGAGCAACAGAC
AGGACGCGTTATTCATCACCGATCTCGCCGTCAATGAAGAAAACGAAGAGAGATTGAATGAGTATGTTCATGCAGGGGGC
AAAGTGAAGCTCATTGACCATCATAAAACAGCCCTTCATTTGAATGAGCATGAATGGGGATTTGTCCAGGTGGAATACGA
TGATGGAAGGCTCACATCCGCGACATCGCTTTTATATGGCTATCTCATTGAAAATGGCTTCATGAAACCGACAAACGCCT
TAGATCAATTCACAGAGCTCGTCCGCCAATACGATACATGGGAGTGGGAGCGGTACGATCAAAAACAGGCGAAGCGGCTT
AATGATCTTTTCTTTTTGCTGTCAATCGATGAATTTGAAGCAAAAATGATCCAGCGCCTTTCCACGCATGACGAATTTTT
CTTCGATGATTTTGAAGAAAAACTGCTTGATTTAGAAGACGAAAAAATCGAGCGCTACCTCCGCAGAAAGAAAAGGGAAA
TGGTACAAACCTTTGTTCACGAACACTGTGTAGGCATCGTTCACGCTGAATCGTACCATTCAGAGCTGGGGAACAGGCTA
GGGAAAGATAACCCGCACCTCGATTACATTGCGATTTTGAGCATGGGGTCAAAACGAGTCAGTCTCCGCACCATTCATGA
TTACATCGATGTGTCAGAAATCGCCGGCCGATATGGCGGCGGAGGGCATGCAAAAGCGTCCGGCTGTTCAATAACCGATG
AAGTATACGAGTTGTTTGTAGCTGAAGCTTTCCGTATTGATCCTGTACGGCCGGATGCCTTCCGTAACATCTATAATCTA
AAGGGATCTGCGAATGGATCATTATATGAAAATCGCGCACAAATGAGATTTTTTCTTTTCCCTTTAGACAACGAATGGAA
TATTCAAATTAACGGAGAAACCCAAGACGAAACATTCGCAGCGTTTGAAGAGGCAGAATGGTTTATTAAGAGAAATTATG
CCGCATCGCTCGTGCGGGATGAAGTGTTTGTCGCATTTTTAGCGGAGAATCTGAAGCTGGCAAATCAACATCGCAAGTAA

Upstream 100 bases:

>100_bases
ATTACCATTGCATAAAACGCTTGGTTTTTTAGAATAGTAAATAAAGGCTGCCGCACCTCTAGCGGCAATTGTCAGTTTAT
CATAAAAAGGGGCCTACATT

Downstream 100 bases:

>100_bases
AAAAATATGCATAGGGGAGCGTCAGTCACCCCTATGCATATCCGCTAGCTATCGTTTAAATATGGCTGTACGTTTCTTAA
TCACAAAATAAAGGGCTATC

Product: ribonuclease

Products: NA

Alternate protein names: NanoRNAse B

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNGLNAQVQYFLEKAKESNRQDALFITDLAVNEENEERLNEYVHAGG
KVKLIDHHKTALHLNEHEWGFVQVEYDDGRLTSATSLLYGYLIENGFMKPTNALDQFTELVRQYDTWEWERYDQKQAKRL
NDLFFLLSIDEFEAKMIQRLSTHDEFFFDDFEEKLLDLEDEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRL
GKDNPHLDYIAILSMGSKRVSLRTIHDYIDVSEIAGRYGGGGHAKASGCSITDEVYELFVAEAFRIDPVRPDAFRNIYNL
KGSANGSLYENRAQMRFFLFPLDNEWNIQINGETQDETFAAFEEAEWFIKRNYAASLVRDEVFVAFLAENLKLANQHRK

Sequences:

>Translated_399_residues
MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNGLNAQVQYFLEKAKESNRQDALFITDLAVNEENEERLNEYVHAGG
KVKLIDHHKTALHLNEHEWGFVQVEYDDGRLTSATSLLYGYLIENGFMKPTNALDQFTELVRQYDTWEWERYDQKQAKRL
NDLFFLLSIDEFEAKMIQRLSTHDEFFFDDFEEKLLDLEDEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRL
GKDNPHLDYIAILSMGSKRVSLRTIHDYIDVSEIAGRYGGGGHAKASGCSITDEVYELFVAEAFRIDPVRPDAFRNIYNL
KGSANGSLYENRAQMRFFLFPLDNEWNIQINGETQDETFAAFEEAEWFIKRNYAASLVRDEVFVAFLAENLKLANQHRK
>Mature_399_residues
MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNGLNAQVQYFLEKAKESNRQDALFITDLAVNEENEERLNEYVHAGG
KVKLIDHHKTALHLNEHEWGFVQVEYDDGRLTSATSLLYGYLIENGFMKPTNALDQFTELVRQYDTWEWERYDQKQAKRL
NDLFFLLSIDEFEAKMIQRLSTHDEFFFDDFEEKLLDLEDEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRL
GKDNPHLDYIAILSMGSKRVSLRTIHDYIDVSEIAGRYGGGGHAKASGCSITDEVYELFVAEAFRIDPVRPDAFRNIYNL
KGSANGSLYENRAQMRFFLFPLDNEWNIQINGETQDETFAAFEEAEWFIKRNYAASLVRDEVFVAFLAENLKLANQHRK

Specific function: Degrades RNA oligonucleotides with a length of 5 nucleotides in a 3'- to 5'-direction. Less active on shorter RNA oligonucleotides and on those with a length of 24 nucleotides. Prefers RNA oligonucleotides containing adenines rather than cytosines

COG id: COG2404

COG function: function code R; Predicted phosphohydrolase (DHH superfamily)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NRNB_BACSU (O31824)

Other databases:

- EMBL:   AL009126
- PIR:   A69893
- RefSeq:   NP_389702.1
- ProteinModelPortal:   O31824
- EnsemblBacteria:   EBBACT00000001570
- GeneID:   936020
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18200
- NMPDR:   fig|224308.1.peg.1823
- GenoList:   BSU18200
- GeneTree:   EBGT00050000006408
- HOGENOM:   HBG491098
- OMA:   SHNDLDG
- ProtClustDB:   CLSK626541
- BioCyc:   BSUB:BSU18200-MONOMER
- GO:   GO:0005737
- InterPro:   IPR003156

Pfam domain/function: PF02272 DHHA1

EC number: NA

Molecular weight: Translated: 46446; Mature: 46446

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNGLNAQVQYFLEKAKESNRQDALFIT
CEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
DLAVNEENEERLNEYVHAGGKVKLIDHHKTALHLNEHEWGFVQVEYDDGRLTSATSLLYG
EEEECCCHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
YLIENGFMKPTNALDQFTELVRQYDTWEWERYDQKQAKRLNDLFFLLSIDEFEAKMIQRL
HHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHH
STHDEFFFDDFEEKLLDLEDEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRL
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHC
GKDNPHLDYIAILSMGSKRVSLRTIHDYIDVSEIAGRYGGGGHAKASGCSITDEVYELFV
CCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AEAFRIDPVRPDAFRNIYNLKGSANGSLYENRAQMRFFLFPLDNEWNIQINGETQDETFA
HHHHCCCCCCCHHHHHHHHCCCCCCCCEECCCCEEEEEEEEECCCEEEEECCCCCCHHHH
AFEEAEWFIKRNYAASLVRDEVFVAFLAENLKLANQHRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNGLNAQVQYFLEKAKESNRQDALFIT
CEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
DLAVNEENEERLNEYVHAGGKVKLIDHHKTALHLNEHEWGFVQVEYDDGRLTSATSLLYG
EEEECCCHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
YLIENGFMKPTNALDQFTELVRQYDTWEWERYDQKQAKRLNDLFFLLSIDEFEAKMIQRL
HHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHH
STHDEFFFDDFEEKLLDLEDEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRL
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHC
GKDNPHLDYIAILSMGSKRVSLRTIHDYIDVSEIAGRYGGGGHAKASGCSITDEVYELFV
CCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AEAFRIDPVRPDAFRNIYNLKGSANGSLYENRAQMRFFLFPLDNEWNIQINGETQDETFA
HHHHCCCCCCCHHHHHHHHCCCCCCCCEECCCCEEEEEEEEECCCEEEEECCCCCCHHHH
AFEEAEWFIKRNYAASLVRDEVFVAFLAENLKLANQHRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377