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The map label for this gene is xynC

Identifier: 16078876

GI number: 16078876

Start: 1942714

End: 1943982

Strand: Reverse

Name: xynC

Synonym: BSU18150

Alternate gene names: 16078876

Gene position: 1943982-1942714 (Counterclockwise)

Preceding gene: 16078877

Following gene: 16078872

Centisome position: 46.11

GC content: 44.21

Gene sequence:

>1269_bases
ATGATTCCACGCATAAAAAAAACAATTTGTGTACTATTAGTATGTTTCACTATGCTGTCAGTCATGTTAGGGCCAGGCGC
TACTGAAGTTTTGGCAGCAAGTGATGTAACAGTTAATGTATCTGCAGAGAAACAAGTGATTCGCGGTTTTGGAGGGATGA
ATCATCCGGCTTGGGCTGGGGATCTTACAGCAGCTCAAAGAGAAACTGCTTTTGGCAATGGACAGAACCAGTTAGGATTT
TCAATCTTAAGAATTCATGTAGATGAAAATCGAAATAATTGGTATAAAGAGGTGGAGACTGCAAAGAGTGCGGTCAAACA
CGGAGCAATCGTTTTTGCTTCTCCTTGGAATCCTCCAAGTGATATGGTTGAGACCTTTAATCGGAATGGTGACACATCGG
CTAAACGGCTGAAATACAACAAGTACGCAGCATACGCGCAGCATCTTAACGATTTTGTTACCTTCATGAAGAATAATGGT
GTGAATCTTTACGCGATTTCGGTCCAAAACGAGCCTGATTACGCTCACGAGTGGACGTGGTGGACGCCGCAAGAAATACT
TCGCTTTATGAGAGAAAACGCCGGCTCGATCAATGCCCGCGTCATTGCGCCTGAGTCATTTCAATACTTGAAGAATTTGT
CGGACCCGATCTTGAACGATCCGCAGGCTCTTGCCAATATGGATATTCTCGGAACTCACCTGTACGGCACCCAGGTCAGC
CAATTCCCTTATCCTCTTTTCAAACAAAAAGGAGCGGGGAAGGACCTTTGGATGACGGAAGTATACTATCCAAACAGTGA
TACCAACTCGGCGGATCGATGGCCTGAGGCATTGGATGTTTCACAGCATATTCACAATGCGATGGTAGAGGGGGACTTTC
AAGCTTATGTATGGTGGTACATCCGAAGATCATATGGACCTATGAAAGAAGATGGTACGATCAGCAAACGCGGCTACAAT
ATGGCTCATTTCTCAAAGTTTGTGCGTCCCGGCTATGTAAGGATTGATGCAACGAAAAACCCTAATGCGAACGTTTACGT
GTCAGCCTATAAAGGTGACAACAAGGTCGTTATTGTTGCCATCAATAAAAGCAACACAGGAGTCAACCAAAACTTTGTTT
TGCAGAATGGATCTGCTTCAAACGTATCTAGATGGATCACGAGCAGCAGCAGCAATCTACAACCTGGAACGAATCTCACT
GTATCAGGCAATCATTTTTGGGCTCATCTTCCAGCTCAAAGCGTGACAACATTTGTTGTAAATCGTTAA

Upstream 100 bases:

>100_bases
CGGGTGAAGTACGGGCCAGCACCGGAACAGCCCGCCATTATGGATATGCCATGCAGATTTTTTAATACCGTAAAAGACAC
ATGACGAAGGAGAGGAATAA

Downstream 100 bases:

>100_bases
GAGCACAAAGACACACATAAATAATAGAGTGTCTGAATTGGCGATTTTCCGATTGGGAAATCGCTTTTTTATTTTGTTGC
TGAATTACAGGAAGAAGAAA

Product: endo-xylanase

Products: NA

Alternate protein names: Endoxylanase xynC; Glucuronoxylan xylanohydrolase [H]

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIPRIKKTICVLLVCFTMLSVMLGPGATEVLAASDVTVNVSAEKQVIRGFGGMNHPAWAGDLTAAQRETAFGNGQNQLGF
SILRIHVDENRNNWYKEVETAKSAVKHGAIVFASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNG
VNLYAISVQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVS
QFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQAYVWWYIRRSYGPMKEDGTISKRGYN
MAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLT
VSGNHFWAHLPAQSVTTFVVNR

Sequences:

>Translated_422_residues
MIPRIKKTICVLLVCFTMLSVMLGPGATEVLAASDVTVNVSAEKQVIRGFGGMNHPAWAGDLTAAQRETAFGNGQNQLGF
SILRIHVDENRNNWYKEVETAKSAVKHGAIVFASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNG
VNLYAISVQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVS
QFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQAYVWWYIRRSYGPMKEDGTISKRGYN
MAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLT
VSGNHFWAHLPAQSVTTFVVNR
>Mature_422_residues
MIPRIKKTICVLLVCFTMLSVMLGPGATEVLAASDVTVNVSAEKQVIRGFGGMNHPAWAGDLTAAQRETAFGNGQNQLGF
SILRIHVDENRNNWYKEVETAKSAVKHGAIVFASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNG
VNLYAISVQNEPDYAHEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVS
QFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQAYVWWYIRRSYGPMKEDGTISKRGYN
MAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLT
VSGNHFWAHLPAQSVTTFVVNR

Specific function: Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn). It cleaves the beta-1,4-xylosidic bond penultimate to that linking carbon one of the xylose residue substituted with alpha-1,2-linked 4-O-methyl-D-glucuronate (MeGA) [H]

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR001139
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02055 Glyco_hydro_30 [H]

EC number: =3.2.1.136 [H]

Molecular weight: Translated: 47338; Mature: 47338

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPRIKKTICVLLVCFTMLSVMLGPGATEVLAASDVTVNVSAEKQVIRGFGGMNHPAWAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCEEEEECHHHHHHHHCCCCCCCCCCC
DLTAAQRETAFGNGQNQLGFSILRIHVDENRNNWYKEVETAKSAVKHGAIVFASPWNPPS
CCHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHH
DMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNGVNLYAISVQNEPDYAHEWTW
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
WTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVS
CCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEECCCHH
QFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQAYVWWY
HCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
IRRSYGPMKEDGTISKRGYNMAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNKVVIVA
EECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEE
INKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLTVSGNHFWAHLPAQSVTTFVV
ECCCCCCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEEECCEEEEECCHHHEEEEEE
NR
CC
>Mature Secondary Structure
MIPRIKKTICVLLVCFTMLSVMLGPGATEVLAASDVTVNVSAEKQVIRGFGGMNHPAWAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCEEEEECHHHHHHHHCCCCCCCCCCC
DLTAAQRETAFGNGQNQLGFSILRIHVDENRNNWYKEVETAKSAVKHGAIVFASPWNPPS
CCHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCHH
DMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNGVNLYAISVQNEPDYAHEWTW
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
WTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVS
CCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEECCCHH
QFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQAYVWWY
HCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
IRRSYGPMKEDGTISKRGYNMAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNKVVIVA
EECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEE
INKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLTVSGNHFWAHLPAQSVTTFVV
ECCCCCCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEEECCEEEEECCHHHEEEEEE
NR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA