Click here to switch to the map view.

The map label for this gene is yhdI

Identifier: 16078013

GI number: 16078013

Start: 1026255

End: 1027664

Strand: Reverse

Name: yhdI

Synonym: BSU09480

Alternate gene names: 16078013

Gene position: 1027664-1026255 (Counterclockwise)

Preceding gene: 16078015

Following gene: 255767223

Centisome position: 24.38

GC content: 47.23

Gene sequence:

>1410_bases
ATGGATATTACGCCGTTTCTTGATAAAAAGAGCAAAACACCGCTGTATGAACAGCTTTATACCTTTTTTAAACAAGAAAT
TTCACATGCGCGAATCACAAAGGGAACAAGACTTCCGTCAAAACGCAGGCTCTCCAGCTTGCTCGATGTCAGCACGGCAA
CTATAGAACGAGCTTATGAGCAATTAACTGCTGAGGGCTATGTCAAAAGCAAGCCGAAAATCGGCTGGTTCGCGGCGGAA
GTAGAACCAGGATTCCCGACAGCTCCTGACCATTTTCAGCAGTCTGTACAGCCGGGATTACATCAAAAAAACGCACCTGC
TATTGACTTCCATCAGGGCAGCGTTGATCCGACCCTCTTTCCCTTTAACGCATGGAGAAAAAGCATAGTAAAAAGTCTTG
ATCGCTATTCCGGATCGTTTCACACCTCTGGCGACCCTCAAGGAGAATACGAACTCAGGCACATGATTGCCCGATTCGTC
AGGCTGTCTCGGGGAGTAAATTGTGAACCCGGCCAGATTATCATCGGCGCAGGAACCACCGTGCTTCTGCAAAATCTTTG
CCTTTCGCTAAAGCCAGGTACAAAAATCGGCTTTGAAGAACCGGGCTTTCACCGTTCAAGAAGGATGTTTGAAGCAAATC
ACATGGATGTCACTCCGATTTGTTCTGATGCAGAAGGCGTCCTGCCGGATGAGCTCTACCGTCAGAATCCTTATCTCATG
TATACGACTCCTTCGCATCAGTTTCCGATTGGGACCATTATGACGATTACCCGCAGACAGGAGCTGCTGGCATGGGCGGC
AGAAACAAATTCATTCATTATAGAAGATGATTACGATGGAGAATTTCGCTACAGCGGCCATCCCATTCCGTCTTTACAGG
GTCTTGATCCGAATGGCAGAGTCATATATCTGGGCACTTTTTCAAAGTCACTTCTGCCTTCCTTGCGGCTCAGCTTCATG
ATTGTGCCCCCTGAACTCATGGAACCGATCCAAAACAATGTTCAGTTAATGAAGCAGACCGTTTCTGCCCACTCGCAATT
GGCACTGGCAGACTTCATCGAAACCGGAGAGTGGCAAAAACACATAAATAGAATGAGAAGCTTATACCGAAAAAAACACG
CTGTCCTGTTAGAAGCCATTCGCTCTGAACTGGGAAACACCGTTGAGATTCTCGGTAAGAACTCGGGGCTTCACATTCTG
CTGCGCCTTTTGTTTCCAGCAAGTGAGGAAGAAGCAATACAAGCAGCCGCTGACCACGGTGTAACCCTCTATCCCGTGTC
TCCCTCATATATAGAACAGACGCCTTTTACTTCTGTCTTAATCGGTTATGGCGGTTTGTCAGAAGAGGACATCAGGCTCG
GCATCCAAAAACTGAAAACGGCATGGGCACCGTTGATATCATCTTATTAA

Upstream 100 bases:

>100_bases
CCCCTTTCCTTTCGTTACAATGATCATAGCTAATAAATGGCATTTGCCAAATAGCCAATATCAGAAAAAATGACCATGCC
AGCTACAAAGGAGACATGAG

Downstream 100 bases:

>100_bases
ATAAAAAACAGGCCCCGGAAACGGAGCCTGTTTTTTAAAATGATAAAATTCCGATTAAATTTAAGAACACGATAATAATG
GCAAGCGGCACGATAAAACG

Product: PLP-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAE
VEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFV
RLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLM
YTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFM
IVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHIL
LRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY

Sequences:

>Translated_469_residues
MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAE
VEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFV
RLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLM
YTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFM
IVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHIL
LRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY
>Mature_469_residues
MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAE
VEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFV
RLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLM
YTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFM
IVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHIL
LRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Homo sapiens, GI7705897, Length=299, Percent_Identity=23.4113712374582, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI33469970, Length=299, Percent_Identity=23.4113712374582, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1787710, Length=438, Percent_Identity=26.7123287671233, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790797, Length=420, Percent_Identity=26.1904761904762, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YHDI_BACSU (O07578)

Other databases:

- EMBL:   Y14082
- EMBL:   AL009126
- PIR:   G69825
- RefSeq:   NP_388829.1
- ProteinModelPortal:   O07578
- EnsemblBacteria:   EBBACT00000001852
- GeneID:   939277
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09480
- NMPDR:   fig|224308.1.peg.948
- GenoList:   BSU09480
- GeneTree:   EBGT00070000031960
- HOGENOM:   HBG752297
- OMA:   DSELRYH
- PhylomeDB:   O07578
- ProtClustDB:   CLSK886766
- BioCyc:   BSUB:BSU09480-MONOMER
- GO:   GO:0005622
- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00345

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR; SSF53383 PyrdxlP-dep_Trfase_major

EC number: NA

Molecular weight: Translated: 52765; Mature: 52765

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLTAEGYVKSKPKIGWFAAEVEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLF
HHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCEEE
PFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFVRLSRGVNCEPGQIIIGAGTT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH
VLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLM
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
YTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGR
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGTFSKSLLPSLRLSFMIVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQK
EEEEECCCHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHILLRLLFPASEEEAIQAAADHG
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCC
VTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY
EEEEECCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLTAEGYVKSKPKIGWFAAEVEPGFPTAPDHFQQSVQPGLHQKNAPAIDFHQGSVDPTLF
HHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCEEE
PFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFVRLSRGVNCEPGQIIIGAGTT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH
VLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPDELYRQNPYLM
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
YTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGR
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGTFSKSLLPSLRLSFMIVPPELMEPIQNNVQLMKQTVSAHSQLALADFIETGEWQK
EEEEECCCHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHILLRLLFPASEEEAIQAAADHG
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCC
VTLYPVSPSYIEQTPFTSVLIGYGGLSEEDIRLGIQKLKTAWAPLISSY
EEEEECCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377