Click here to switch to the map view.

The map label for this gene is yfiV

Identifier: 16077908

GI number: 16077908

Start: 916124

End: 916606

Strand: Reverse

Name: yfiV

Synonym: BSU08410

Alternate gene names: 16077908

Gene position: 916606-916124 (Counterclockwise)

Preceding gene: 16077911

Following gene: 16077907

Centisome position: 21.74

GC content: 44.1

Gene sequence:

>483_bases
ATGGAATATAATTTACACGATACAACAGTCTTAAACGAAAACATTCTTTCATCGGAGGAACGGGAAATATGGGTGCTCTA
TATGAAAGTCTTAACGTCCGCCGGGCTCGGTGATGTGTCCGAGTGGATGAAACTGGATATGAGCATGCCGCAAATGAAGG
TGCTGATGCTATTAAACAACCATGGAACATTGAAAGTGAGCGACATTGCTGAAAAAATGGGGGCTTCCCTGTCCAATACA
ACTGGGCTGCTTGACCGGCTTGAAAAATCAGGATTTGTCAAACGCTCACATTCTGAAGAGGACCGCCGCTCTGTAGTTGT
TCAGTTGACAGAGAATGCGAAAAAGATTTTCCGGGGTTTGTATGAAAAGGGCCACCTGAAATTGAAGCGTTCATTAGAGC
TGCTGTCCCCTGAAGAAAAGCAGGCTGTTTACGAAGGGCTGTCTATCCTTTCAAGAGCATTAGAGAATGCGAAAAAAGAA
TAA

Upstream 100 bases:

>100_bases
TTTTTCGGACAAAGTCCCGCATGCGGTTTCTGCTCACTTTCTTTCAGGAGTGAAAATCGAGTAATATGGTAAGAGGAGTG
AATGATGAGGAAGTGATGAA

Downstream 100 bases:

>100_bases
ATCAGTAAGTCTGTCATCCGCAAACTGCGGGAGCAGGCTTTTTTTATTTGACATTTAGTTCATTTAAAATGAATAATATA
TTTCAAGTGAACTAAAAGGA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMKLDMSMPQMKVLMLLNNHGTLKVSDIAEKMGASLSNT
TGLLDRLEKSGFVKRSHSEEDRRSVVVQLTENAKKIFRGLYEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE

Sequences:

>Translated_160_residues
MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMKLDMSMPQMKVLMLLNNHGTLKVSDIAEKMGASLSNT
TGLLDRLEKSGFVKRSHSEEDRRSVVVQLTENAKKIFRGLYEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE
>Mature_160_residues
MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMKLDMSMPQMKVLMLLNNHGTLKVSDIAEKMGASLSNT
TGLLDRLEKSGFVKRSHSEEDRRSVVVQLTENAKKIFRGLYEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFIV_BACSU (O31564)

Other databases:

- EMBL:   D85082
- EMBL:   AL009126
- PIR:   H69804
- RefSeq:   NP_388722.1
- HSSP:   O34777
- ProteinModelPortal:   O31564
- SMR:   O31564
- EnsemblBacteria:   EBBACT00000000744
- GeneID:   939218
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08410
- NMPDR:   fig|224308.1.peg.841
- GenoList:   BSU08410
- GeneTree:   EBGT00070000031942
- HOGENOM:   HBG338649
- OMA:   EWMKLDM
- ProtClustDB:   CLSK886900
- BioCyc:   BSUB:BSU08410-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 18211; Mature: 18211

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMKLDMSMPQMKVLMLLNN
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHCCC
HGTLKVSDIAEKMGASLSNTTGLLDRLEKSGFVKRSHSEEDRRSVVVQLTENAKKIFRGL
CCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMKLDMSMPQMKVLMLLNN
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHCCC
HGTLKVSDIAEKMGASLSNTTGLLDRLEKSGFVKRSHSEEDRRSVVVQLTENAKKIFRGL
CCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377