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The map label for this gene is yfkM

Identifier: 16077852

GI number: 16077852

Start: 859745

End: 860263

Strand: Direct

Name: yfkM

Synonym: BSU07850

Alternate gene names: 16077852

Gene position: 859745-860263 (Clockwise)

Preceding gene: 16077850

Following gene: 16077855

Centisome position: 20.39

GC content: 47.01

Gene sequence:

>519_bases
ATGGGGAAAAAAATTGCAGTTGTTTTAACATATTATTTTGAGGACAGCGAGTACACTGAGCCTGCGAAAGCCTTTAAAGA
AGCGGGACATGAACTGACTGTCATCGAAAAAGAAAAAGGAAAAACAGTAAAAGGCAAGCAGGGAACAGCGGAAGTGACGG
TTGACGCGTCCATTGACGACGTAAATTCTTCAGACTTTGATGCGCTTTTGATTCCTGGAGGATTTTCACCAGACCAGCTT
CGCGCTGACGATCGTTTCGTCCAATTTACAAAAGCGTTTATGACTGACAAAAAGCCGGTATTTGCCATTTGCCACGGCCC
GCAGCTTTTAATCAATGCGAAAGCGCTCGACGGCCGAAAAGCGACGGGCTATACGTCCATTCGTGTTGACATGGAAAACG
CCGGTGCCGACGTTGTGGACAAGGAAGTGGTTGTTTGCCAGGATCAATTGGTCACTAGCCGCACACCGGACGATATACCG
GCATTTAACCGCGAGTCATTGGCATTGCTTGAGAAATAA

Upstream 100 bases:

>100_bases
GCATTTATGCTTATCGTTTGTCACAATCGCGGAATGTTTATTTTAGTGTGGCTGGGGTAGAGTGTTTTATGTAGACATAT
AAAGCGGGAGGTTATGAATC

Downstream 100 bases:

>100_bases
GAAAAAACGGACGCTCTTGGGCGTCCGTTTTTTTGTTGCTTAGGCTTGAGCACCTGTCAGTTTCTTGTACCTGTAATACA
AGAAAGCAGCTGCAGCCGTT

Product: general stress protein 18

Products: NA

Alternate protein names: GSP18

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MGKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQL
RADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIP
AFNRESLALLEK

Sequences:

>Translated_172_residues
MGKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQL
RADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIP
AFNRESLALLEK
>Mature_171_residues
GKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLR
ADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIPA
FNRESLALLEK

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain

Homologues:

Organism=Escherichia coli, GI87082219, Length=170, Percent_Identity=64.1176470588235, Blast_Score=227, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GS18_BACSU (P80876)

Other databases:

- EMBL:   D83967
- EMBL:   AL009126
- PIR:   H69808
- RefSeq:   NP_388666.1
- ProteinModelPortal:   P80876
- SMR:   P80876
- EnsemblBacteria:   EBBACT00000001036
- GeneID:   938808
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07850
- NMPDR:   fig|224308.1.peg.785
- GenoList:   BSU07850
- GeneTree:   EBGT00050000000998
- HOGENOM:   HBG646910
- OMA:   DDVSPEN
- PhylomeDB:   P80876
- ProtClustDB:   CLSK886869
- BioCyc:   BSUB:BSU07850-MONOMER
- InterPro:   IPR006286
- InterPro:   IPR002818
- TIGRFAMs:   TIGR01382

Pfam domain/function: PF01965 DJ-1_PfpI

EC number: NA

Molecular weight: Translated: 18863; Mature: 18732

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS51276 PEPTIDASE_C56_PFPI

Important sites: ACT_SITE 104-104 ACT_SITE 105-105

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDD
CCCEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCEEEEEECCCCC
VNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRK
CCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
ATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIPAFNRESLALLEK
CCCEEEEEEEECCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
GKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDD
CCEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCEECCCCCCEEEEEECCCCC
VNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRK
CCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCC
ATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIPAFNRESLALLEK
CCCEEEEEEEECCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 9298659