Click here to switch to the map view.

The map label for this gene is ydeR

Identifier: 16077598

GI number: 16077598

Start: 576946

End: 578133

Strand: Reverse

Name: ydeR

Synonym: BSU05310

Alternate gene names: 16077598

Gene position: 578133-576946 (Counterclockwise)

Preceding gene: 16077603

Following gene: 16077596

Centisome position: 13.71

GC content: 46.97

Gene sequence:

>1188_bases
ATGGCTAATGGAAACAAACAAGCAGGTCAGAGGATTTCACCCAGTTTAACCCTTCTTCTCGCAACTGCATGCGGTATCAT
TGTTGCTAATCTTTACTATGCACAACCCTTGGTCGGATTAATTAGTAAGGCAATTGGACTTTCTCCAAGCGGTGCTGGAT
TGATTGTCACACTCACCCAAATCGGATACGTTGCCGGCTTACTATTCCTTGTCCCTTTAGGAGATATTATCGAAAACAAA
AAACTTATTGTTGTATCGCTCCTTCTAAGCGCAGCGGCTTTGACACTAACAGCATTTGTGAAGCATGGAACACTGTTTTT
AGCAGCTGCGTTTTTCGTCGGATTGGGATCAATCGCAGCCCAAGTGCTTGTTCCATTTGCATCATACCTTGCATCAGACG
CTGCACGCGGCCGGGTTGTTGGCAATGTCATGAGCGGCTTATTACTCGGTATTATGCTTTCCCGTCCGATATCTAGTCTA
GTCGCTGATATCTGGGGGTGGAATGCAATATTCGCTTTGTCCGCCGTGGTAAGTGTTATCCTGGCCATCGTATTATCAAA
AGTGCTTCCTGCCAGAAAACCAACAGCAAATACAAACTATACTGCCTTACTCGGTTCAATGTGGAAGCTGCTGCGCACGA
CTCCAGTCTTACGCCGCCGTGCCATCTATCATGCGTTTGTATTTGGAGCTTTCAGCTTGTTCTGGACAACTGTTCCTTTA
TTATTGTCCGGTCCTGATTTTCATTTTTCTCAGAAGGCAATAGCACTCTACGCATTGGTGGGCATTGCGGGTGCAGTCAC
TGCACCAATAGGCGGCCGCCTGGCTGATCGAGGCTTAACCAGGCTTGCCACTGGAATCGCTCTCGGTGTTGTCGTTGTCT
CTTTATTACTGCCGCTCATGATTCAGAGCAGCTCCCCCGTCGGTATAACAGTTCTAGTGGCCGCTGCTATTCTGTTAGAT
ATGGGTGTATCTGCAAACCTTGTGCTCAGTCAACGTGCTATTTTTTCGTTGGCGCCTGAAATTCGCAGTCGATTAAACGG
ATTATTCATGGCGATCTTCTTTCTAGGCGGTGCGATAGGGTCATCAATTGGAGGATGGGCATATGCCTCAGGCGGATGGA
GTACAGCATTATGGATTGGAATCGCTTTTCCGGTCATCGCTTTGCTTTATTTCATCACAGAGAAATAA

Upstream 100 bases:

>100_bases
TATTTTTATTAATCGACGAAACTGAACGTTCAGTTTATAAAATCACTTGTGAGAAGTCATGATTACACTCAAAAAACCAC
TTAAAAAGGAGTTCATTCAT

Downstream 100 bases:

>100_bases
GTATTTCACCAAAAATAAGCAGTCAGGACCAAGCAAATAGCTTATTTTTGGTGGCTTCTTCTTTTTTTGCTATATGTTAA
AATCCCTCTGCTGAACAAGA

Product: efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKAIGLSPSGAGLIVTLTQIGYVAGLLFLVPLGDIIENK
KLIVVSLLLSAAALTLTAFVKHGTLFLAAAFFVGLGSIAAQVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSL
VADIWGWNAIFALSAVVSVILAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVPL
LLSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLADRGLTRLATGIALGVVVVSLLLPLMIQSSSPVGITVLVAAAILLD
MGVSANLVLSQRAIFSLAPEIRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSTALWIGIAFPVIALLYFITEK

Sequences:

>Translated_395_residues
MANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKAIGLSPSGAGLIVTLTQIGYVAGLLFLVPLGDIIENK
KLIVVSLLLSAAALTLTAFVKHGTLFLAAAFFVGLGSIAAQVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSL
VADIWGWNAIFALSAVVSVILAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVPL
LLSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLADRGLTRLATGIALGVVVVSLLLPLMIQSSSPVGITVLVAAAILLD
MGVSANLVLSQRAIFSLAPEIRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSTALWIGIAFPVIALLYFITEK
>Mature_394_residues
ANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKAIGLSPSGAGLIVTLTQIGYVAGLLFLVPLGDIIENKK
LIVVSLLLSAAALTLTAFVKHGTLFLAAAFFVGLGSIAAQVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSLV
ADIWGWNAIFALSAVVSVILAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVPLL
LSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLADRGLTRLATGIALGVVVVSLLLPLMIQSSSPVGITVLVAAAILLDM
GVSANLVLSQRAIFSLAPEIRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSTALWIGIAFPVIALLYFITEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily

Homologues:

Organism=Escherichia coli, GI1787880, Length=382, Percent_Identity=24.3455497382199, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDER_BACSU (P96675)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   D69779
- RefSeq:   NP_388412.1
- ProteinModelPortal:   P96675
- SMR:   P96675
- EnsemblBacteria:   EBBACT00000003602
- GeneID:   938096
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05310
- NMPDR:   fig|224308.1.peg.531
- GenoList:   BSU05310
- GeneTree:   EBGT00070000031967
- HOGENOM:   HBG701474
- OMA:   QPLAGPI
- PhylomeDB:   P96675
- ProtClustDB:   CLSK886768
- BioCyc:   BSUB:BSU05310-MONOMER
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 41145; Mature: 41014

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS50850 MFS; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc3cde80)-; HASH(0xcfd22b0)-; HASH(0xce04af8)-; HASH(0xce1e22c)-; HASH(0xcdf1374)-; HASH(0xd1189b8)-; HASH(0xb4c5304)-; HASH(0xce294d8)-; HASH(0xc40ae9c)-; HASH(0xd197c7c)-; HASH(0xcc9791c)-; HASH(0xc7a16c8)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
ANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKAIGLSPSGAGLIVTLTQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH
IGYVAGLLFLVPLGDIIENKKLIVVSLLLSAAALTLTAFVKHGTLFLAAAFFVGLGSIAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSLVADIWGWNAIFALSAVVSVI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVPL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLADRGLTRLATGIALGVVVVSLLLPLM
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQSSSPVGITVLVAAAILLDMGVSANLVLSQRAIFSLAPEIRSRLNGLFMAIFFLGGAIG
HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSIGGWAYASGGWSTALWIGIAFPVIALLYFITEK
CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377