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The map label for this gene is ydeP

Identifier: 16077596

GI number: 16077596

Start: 575712

End: 576098

Strand: Reverse

Name: ydeP

Synonym: BSU05290

Alternate gene names: 16077596

Gene position: 576098-575712 (Counterclockwise)

Preceding gene: 16077598

Following gene: 16077594

Centisome position: 13.67

GC content: 39.53

Gene sequence:

>387_bases
TTGAGAAATCGTAAACTCGGCATTGATTATTCTTCTGATGACTTTGAAGGATGTCCGGTGGAGACAACATTAGATATCAT
CGGAGGTAAGTGGAAAGGCATTCTTCTTTATCATCTCATTGACGGTAAAAAGAGGTTTAATGAGTTTCGAAAACTATACC
CAAAAATTACCCAGCGTATGCTCACGCTACAATTAAGAGAATTGGAACGGGATGGCGTGATTCACCGCGAGGTTTATAAA
CAGGTCCCTCCAAAAGTCGAATACTCTTTAACTGAGTTTGGAAGAACATTAGAACCTGTTATCCTGCACATGAAGGACTG
GGGAGAAAAATATAAAGACAGGATTGATAAGCTCGAAGCAGCACGTAAAGCTGAAGATAAAATCTAA

Upstream 100 bases:

>100_bases
CCTTAGATGTGACATCATTATATGATGTATATTAAAATATAAAAAGTACGCACATTGAATGTATATAGTATCAAAAAGTA
TACTATTAGGAGTGAACAGC

Downstream 100 bases:

>100_bases
TAACCAGAAAAAATACCAAGGGTTTTGACGCCCTTGGTATTTCTGTGATTCAGACCTTCACCGGTTATTCACCCACAAGC
CTCAAAAAAGTGTTTTTGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDGVIHREVYK
QVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEAARKAEDKI

Sequences:

>Translated_128_residues
MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDGVIHREVYK
QVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEAARKAEDKI
>Mature_128_residues
MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDGVIHREVYK
QVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEAARKAEDKI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=35.1063829787234, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEP_BACSU (P96673)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   B69779
- RefSeq:   NP_388410.1
- ProteinModelPortal:   P96673
- SMR:   P96673
- EnsemblBacteria:   EBBACT00000002875
- GeneID:   938100
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05290
- NMPDR:   fig|224308.1.peg.529
- GenoList:   BSU05290
- GeneTree:   EBGT00070000031789
- HOGENOM:   HBG752497
- OMA:   PGCAVEA
- PhylomeDB:   P96673
- ProtClustDB:   CLSK872808
- BioCyc:   BSUB:BSU05290-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 15211; Mature: 15211

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRM
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHH
LTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEA
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARKAEDKI
HHHHCCCC
>Mature Secondary Structure
MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRM
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHH
LTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEA
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARKAEDKI
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377