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The map label for this gene is ydzF

Identifier: 16077594

GI number: 16077594

Start: 574106

End: 574435

Strand: Reverse

Name: ydzF

Synonym: BSU05270

Alternate gene names: 16077594

Gene position: 574435-574106 (Counterclockwise)

Preceding gene: 16077596

Following gene: 16077593

Centisome position: 13.63

GC content: 44.55

Gene sequence:

>330_bases
ATGAATAGCCTGTGCCGCAGTAAACAAGCCCCATTTGAATACACCTTATCTCTTATAGGGGGCAAATGGAAAATGAGAAT
TCTCTATGAGTTAGGGTGTGAAAAAACGATGAGATACGGCGAGCTGAAAAGGGCTATGCCCTTCATCACCCATAAAATGT
TAAGCGCACAGCTTAAGGAATTGCAAACTGACGGCCTTATTCATCGGTCTGAGGTTTCTCACACCCCACTGAAAGTAGAG
TATTCGTTATCTGACAGAGGGCGATCTTTGTATCCCCTCATAGATGAGATGTGTAAGTGGGGAATGGCACAAGGAGGGCC
TCATATGTAA

Upstream 100 bases:

>100_bases
GCGGCCCCTTTCACTTCAGATCGTGAATCGCCCTCAAACTTCAACACCGAAAATCCTAATTTATTCTGATATGATACTTA
AAAAAGGAGGTTTGATTACA

Downstream 100 bases:

>100_bases
AGCTACTTACAAAAAAGTGCGTACTTGTTTCCCAATGAGAGGAATTTTATACTGAATGAAAATATTTCTTAGGAGGAAAT
AATGACAAAACAAGTCTATA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVE
YSLSDRGRSLYPLIDEMCKWGMAQGGPHM

Sequences:

>Translated_109_residues
MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVE
YSLSDRGRSLYPLIDEMCKWGMAQGGPHM
>Mature_109_residues
MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVE
YSLSDRGRSLYPLIDEMCKWGMAQGGPHM

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDZF_BACSU (O31494)

Other databases:

- EMBL:   AL009126
- PIR:   G69790
- RefSeq:   NP_388408.1
- ProteinModelPortal:   O31494
- SMR:   O31494
- EnsemblBacteria:   EBBACT00000000490
- GeneID:   938088
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05270
- NMPDR:   fig|224308.1.peg.527
- GenoList:   BSU05270
- GeneTree:   EBGT00070000031964
- HOGENOM:   HBG752497
- OMA:   KDTGFGY
- ProtClustDB:   CLSK2752322
- BioCyc:   BSUB:BSU05270-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 12581; Mature: 12581

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKE
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTDGLIHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKWGMAQGGPHM
HHHCCCEECCCCCCCCEEEEEECCCCCCEEHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKE
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTDGLIHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKWGMAQGGPHM
HHHCCCEECCCCCCCCEEEEEECCCCCCEEHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377