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The map label for this gene is ydeE

Identifier: 16077584

GI number: 16077584

Start: 563614

End: 564486

Strand: Reverse

Name: ydeE

Synonym: BSU05170

Alternate gene names: 16077584

Gene position: 564486-563614 (Counterclockwise)

Preceding gene: 16077589

Following gene: 16077582

Centisome position: 13.39

GC content: 37.92

Gene sequence:

>873_bases
ATGGATTTGCTTAAAAGTATGAATAGGGCGTTAAAGTATATTGAAGAAAACCTCACTAATGATATTGATTTTCAAGAGGC
AGCAAAGCTTGCTTTCTGCTCTGAATATCATTTTAAAAGGATGTTTTCCTTCCTTGCAGGTATTTCATTATCGGAATATA
TTCGTCGCAGACGTCTTACTCTTGCAGCTTTTGAACTGAAAGACAGCAATGTAAAAGTGATTGATATTGCAATAAAGTAC
GGTTATAACTCACCAGATTCTTTTGCACGGGCATTCCAAAATTTACATGGCATAAACCCATCAAAAGCCAGATTTAATGG
CCATTCCCTTAAAGCTTATCCACGAATGACCTTCCAGCTAACAATTAAAGGAGGAAATGAAATGAACTACCGTATTGAAG
AAAAAGAGGCATTTCGCATCGTTGGCATTAAAAAAAGAGTTCCTATTATTTTCAAAGGAATTAATCCGGAAATTGCATCT
ATGTGGGAAAGTTTAGATGAAAAAGCAATAAATAAACTAAAAGAGCTATCTAATGTAGCACCATCAGGCCTCATTAGTGC
ATCCACGAATTTTTCTGAAGGTCGGACAGAGGAAAACGGAGAGCTCGATCACTATATTGGCGCAGCCACAACGAAACGGT
GTCCAGATAACTTCTCACGGCTTGAAGTTCCTGCCTCAACATGGGCTGTATTCGAATCAATCGGGCCATTTCCGGATACA
CTGCAAGAAGTATGGGGACGCATTTATTCCGAATGGTTTCCATCGTCAAATTACGAACAAATAGAAGGTCCAGAAATATT
GTGGAACGAGCATAAGGATGTAACATCACCATCTTTTAAAAGTGAAATTTGGATACCAATCACAAAAAAGTAA

Upstream 100 bases:

>100_bases
CTTACTTTATTTCATATAAGTCATCCTGCAAAACTGTGCACAGAATGTCGGATAAATACATTTCACTCCTGTTATTCTTT
GGTTAAAGGAGGCCAAATAA

Downstream 100 bases:

>100_bases
TACGTTTTTCAATCAGAGAAGAAAAATTGAAGGTTCTTGAAGAAAAAATACCTAGGGCGTCAAAACCCTTGGTATTTTTG
ATACTGCCGAGAGGGCTCAA

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKY
GYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIAS
MWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDT
LQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK

Sequences:

>Translated_290_residues
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKY
GYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIAS
MWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDT
LQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK
>Mature_290_residues
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKY
GYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIAS
MWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDT
LQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081928, Length=100, Percent_Identity=33, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790497, Length=100, Percent_Identity=33, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEE_BACSU (P96662)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   G69777
- RefSeq:   NP_388398.1
- ProteinModelPortal:   P96662
- SMR:   P96662
- EnsemblBacteria:   EBBACT00000001513
- GeneID:   938117
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05170
- NMPDR:   fig|224308.1.peg.517
- GenoList:   BSU05170
- GeneTree:   EBGT00070000031869
- HOGENOM:   HBG676594
- OMA:   CSEYHFK
- PhylomeDB:   P96662
- ProtClustDB:   CLSK886764
- BioCyc:   BSUB:BSU05170-MONOMER
- GO:   GO:0005737
- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256
- Gene3D:   G3DSA:1.10.10.60
- PRINTS:   PR00032
- SMART:   SM00871
- SMART:   SM00342

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC; SSF55136 Bac_reg_effector; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 33257; Mature: 33257

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQL
HEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEE
TIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVA
EEECCCCCCEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
PSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDT
CCCEEECCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCHHEECCHHHHHHHHHCCCCHHH
LQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK
HHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQL
HEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEE
TIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVA
EEECCCCCCEEECCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
PSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDT
CCCEEECCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCHHEECCHHHHHHHHHCCCCHHH
LQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK
HHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377