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The map label for this gene is ydeC

Identifier: 16077582

GI number: 16077582

Start: 561514

End: 562389

Strand: Reverse

Name: ydeC

Synonym: BSU05150

Alternate gene names: 16077582

Gene position: 562389-561514 (Counterclockwise)

Preceding gene: 16077584

Following gene: 16077581

Centisome position: 13.34

GC content: 34.47

Gene sequence:

>876_bases
ATGAAGAATTTTGTGATCGATCAAAATTTAAAAGAATTAACAGAGCACCGAACGGTAGAATTGCCAGTTGCCTGCTACAA
GACAACGATCAATCAAAATATAAATGGCTATATTCCGCTTCATTGGCATGATGAAATCCAATTTGTTTTGATACTAAAAG
GGATAGCTCTCTTTCAAATAAATGAAGAAAAAATAGAGGTTCACGAAGGGGATGGATTATTTATCAATAGCGGCTACCTG
CACATGGCCGAAGAAAAGGAAGGCTCGGATTGTACGTATATTTGCTTGAATGTGTCACCCCATTTCGTTTTATCTCAGGA
ACTGTATTCAAGCTATGTTCAGCCCTATATGTTTTCAACCAATTTGCCCTATTTATTTTTGGCTGGAAATCAACAGTGGG
CAAAAAATATTCTAGATGCTGTTAAAAAAATAAATCAATTGATTCAACAAAAGACATCGCTCTATGAGATTGACATTACG
ATGCAATTAACGTTAATGTGGAAAAACCTGGTCGTTAATGGTTTTCAATTAGAGTACGATCAATCTGAAATGATAAAAAG
TCATCGAATGAAACAAATGTTAAACTGGATCCATCTCCATTATGTTGAAAAAATCACATTAGAGGACATTGCAAAAGCTG
GCCAACTGAGCCGTTCTGAATGCTGCCGTTATTTTAAACGAATGCTGAATAAGACGCCATTACGTTATGTAATGGATTAT
AGAATTCAAAAAAGCTTATTATTACTGCAACACCCTGAATCCAATGTGACAGAAGTGTCTTATCAAGTTGGATTTAACAG
TACCAGTTATTTCATAAGTAAATTTCAACAAGCGATGAATATGACGCCATTATCATACAAAAAAATGAATTCATAA

Upstream 100 bases:

>100_bases
ACTAATAAATATAATAATAGTGTTATAATAAATGCAAAACATGATAAAAAATACTCAAATTGAATGAAAAAATATAAATA
TATTGAGGTGTGAAGTCAGA

Downstream 100 bases:

>100_bases
AGTTTATTCTATTAATAAATGGAGTCCCTGTTAATGGTACTCCCCTAGCACGATTTTTACGCCACTACTGCTTGACCCTA
AAATTCTAGGTGGCCTTTTG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYL
HMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDIT
MQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY
RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS

Sequences:

>Translated_291_residues
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYL
HMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDIT
MQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY
RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS
>Mature_291_residues
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYL
HMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDIT
MQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY
RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787987, Length=252, Percent_Identity=24.2063492063492, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790339, Length=259, Percent_Identity=20.4633204633205, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790559, Length=260, Percent_Identity=22.6923076923077, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788030, Length=271, Percent_Identity=25.4612546125461, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YDEC_BACSU (P96660)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   E69777
- RefSeq:   NP_388396.1
- ProteinModelPortal:   P96660
- EnsemblBacteria:   EBBACT00000001922
- GeneID:   938103
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05150
- NMPDR:   fig|224308.1.peg.515
- GenoList:   BSU05150
- GeneTree:   EBGT00070000032305
- HOGENOM:   HBG534683
- OMA:   RSECCRY
- PhylomeDB:   P96660
- ProtClustDB:   CLSK986480
- BioCyc:   BSUB:BSU05150-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:2.60.120.10
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC; SSF51215 AraC_binding; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 34226; Mature: 34226

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQI
CCCCCCCCCHHHHHHCCEEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCEEEEEE
NEEKIEVHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFST
CCCEEEEECCCEEEEECCEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCEEEEC
NLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLVVNGFQLEYD
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEHHHHCCCEEEECC
QSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS
HHHHHEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQI
CCCCCCCCCHHHHHHCCEEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCEEEEEE
NEEKIEVHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFST
CCCEEEEECCCEEEEECCEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCEEEEC
NLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLVVNGFQLEYD
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEHHHHCCCEEEECC
QSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
RIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS
HHHHHEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377