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The map label for this gene is ydeB

Identifier: 16077580

GI number: 16077580

Start: 560151

End: 560612

Strand: Reverse

Name: ydeB

Synonym: BSU05130

Alternate gene names: 16077580

Gene position: 560612-560151 (Counterclockwise)

Preceding gene: 16077581

Following gene: 16077573

Centisome position: 13.3

GC content: 32.47

Gene sequence:

>462_bases
ATGTTTCAAATTGGCGATAACATTGTTTATCCAATGCACGGAGCAGGTATAATTGAAGCCATAGAAGAAAAAGAATTCTT
AGAGGAAAAACAACAGTATTATGTCATAAGAATGTCAATCAGTAATATGACAGTTATGATTCCAACGAGTAAAATATTGA
GTTCGAATATACGACCAGTTACCGATATACTTGCATTAAAACACATTATGCACATTTTTCAGCATGGAGAATCCGATAGG
TTACTGCCATGGAAGCAAAGGTACAAAATAAACACGGACAAAATAAAAACAGGTGAAATACAAGAAGGTGCTGAAGTTGT
ACGTGATTTAATGCGTATGAAGAAAGAAAAAGCACTTAATGCAAGCGAAAAAAAAATGCTGGATAATGCATATGAATTTT
TGATTAGTGAACTGGAAGTAATTAAAGGAATCACTGAAAAACAAATAAAAAGTTTTGGTTAG

Upstream 100 bases:

>100_bases
ATTGACATCAAAAATTCGATCATGTTATTATTAAAATTTTGATATTACACCTCCATATATGGTAATCTTAAGAAGGATAC
CATATATGGAGGTGGATGAT

Downstream 100 bases:

>100_bases
ATACATCCCAAAAGATATTTCGGAATATTATGATGAAAAGCAAATCTTCTCCAACTTATGTTTAGAACATTAACGACCTC
TTTTGTTATTCCTACATTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDR
LLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSFG

Sequences:

>Translated_153_residues
MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDR
LLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSFG
>Mature_153_residues
MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDR
LLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSFG

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEB_BACSU (P96659)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   D69777
- RefSeq:   NP_388394.1
- ProteinModelPortal:   P96659
- EnsemblBacteria:   EBBACT00000000951
- GeneID:   938120
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05130
- NMPDR:   fig|224308.1.peg.513
- GenoList:   BSU05130
- GeneTree:   EBGT00050000003046
- HOGENOM:   HBG449706
- OMA:   IIHIFQH
- ProtClustDB:   CLSK873758
- BioCyc:   BSUB:BSU05130-MONOMER
- InterPro:   IPR003711

Pfam domain/function: PF02559 CarD_TRCF

EC number: NA

Molecular weight: Translated: 17746; Mature: 17746

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPV
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEECHHHHHCCCCHH
TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
ASEKKMLDNAYEFLISELEVIKGITEKQIKSFG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPV
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEECHHHHHCCCCHH
TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
ASEKKMLDNAYEFLISELEVIKGITEKQIKSFG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377