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The map label for this gene is lrpB

Identifier: 16077573

GI number: 16077573

Start: 552052

End: 552501

Strand: Reverse

Name: lrpB

Synonym: BSU05060

Alternate gene names: 16077573

Gene position: 552501-552052 (Counterclockwise)

Preceding gene: 16077580

Following gene: 16077571

Centisome position: 13.11

GC content: 31.56

Gene sequence:

>450_bases
ATGCAAATTGATTCAATTGATTTTCAAATTCTCCAATTATTAAATAAAAATGCTCGGATACAATGGAAAGAAATCGGTGA
AAAAATTCATATGACAGGACAAGCGGTAGGCAATCGCATCAAAAAAATGGAGGATAACGGTATCATTAAAGCATATTCGA
TTGTGGTTGATGAATTGAAGATGGGGTTTTCTTTTACAGCCTTTGTCTTCTTTTTCATGAATGCATATATGCATGATGAT
TTATTGAAATTTATTGCTACTCGTAATGAAATTAGCGAAGCTCATCGTGTTTCGGGAGATGCATGTTATCTTCTGAAGGT
AACGGTTCATTCACAAGAAGTTTTAAATCACCTTCTGAATGATTTATTGAAGTATGGAAACTATCAGCTTTATTTGTCTA
TTAAGGAAGTAAAAAAGCATTATAATACTTCATTAATGTCTGATGAATAA

Upstream 100 bases:

>100_bases
AAATTTTTATACTGTATAAGGATATATAATTTCCATTGAATTTTCGATGGTCTCATGAAATACTATTTTGTAAAACTTTT
TCACTGTGAAAGGAGTTACT

Downstream 100 bases:

>100_bases
TGCGCTTGTTATTATAATGTATAAAAAGGCCCCAGCTTGGTAAATTCCATATCCAACCTAGGGCTTTTTTAGAGCATATA
TATCATGTTATATGACCGCA

Product: Lrp/AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMGFSFTAFVFFFMNAYMHDD
LLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVKKHYNTSLMSDE

Sequences:

>Translated_149_residues
MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMGFSFTAFVFFFMNAYMHDD
LLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVKKHYNTSLMSDE
>Mature_149_residues
MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMGFSFTAFVFFFMNAYMHDD
LLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVKKHYNTSLMSDE

Specific function: Negative regulation of glyA transcription and kinB- dependent sporulation

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): LRPB_BACSU (P96653)

Other databases:

- EMBL:   L44122
- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   E69653
- RefSeq:   NP_388387.1
- ProteinModelPortal:   P96653
- SMR:   P96653
- EnsemblBacteria:   EBBACT00000000939
- GeneID:   939912
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05060
- NMPDR:   fig|224308.1.peg.506
- GenoList:   BSU05060
- GeneTree:   EBGT00050000002026
- HOGENOM:   HBG740878
- OMA:   HRFIETA
- BioCyc:   BSUB:BSU05060-MONOMER
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 17326; Mature: 17326

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELK
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MGFSFTAFVFFFMNAYMHDDLLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLN
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHH
DLLKYGNYQLYLSIKEVKKHYNTSLMSDE
HHHHHCCEEEEEEHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELK
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MGFSFTAFVFFFMNAYMHDDLLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLN
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHH
DLLKYGNYQLYLSIKEVKKHYNTSLMSDE
HHHHHCCEEEEEEHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902725; 9384377