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The map label for this gene is ydcA

Identifier: 16077528

GI number: 16077528

Start: 515016

End: 515615

Strand: Reverse

Name: ydcA

Synonym: BSU04610

Alternate gene names: 16077528

Gene position: 515615-515016 (Counterclockwise)

Preceding gene: 16077547

Following gene: 16077522

Centisome position: 12.23

GC content: 45.5

Gene sequence:

>600_bases
ATGTTTATACGGACTGAAAATTTTCAAACATTTATCAGGCTTTACCCCGTTGTCACCTTTATATTGGCTTTGCAAGCTGT
TCTCTGGCTGTTTTTTTCACTTCCTGCCCATTCAGTCGTGTTATGGAGGGATACCGTCACAGGCTATAATCTAGGTGTCG
CAAACGGTGAATGGTGGCGGCTTATCACACCGATTTTGCTGCACGCCGGTTTCACACATCTGCTGTTTAATTCCATGTCC
ATCTTTTTATTTGCCCCGGCTTTGGAACGCATGCTGGGAAAAGCGCGTTTCCTTCTTGTATACGCCGGCTCCGGCATCAT
CGGCAATATCGGCACTTATGTTACAGAGCCGCTTGATTACGTGCATGTCGGGGCTTCAGGCGCCATTTTCGGGCTATTTG
GCGTATACCTGTTTATGGTTCTTTTTCGCAATGAGTTAATTGGGCAGGAGCATTCCAAAATGATCATCACACTGCTCGCA
TTTGCCGTTCTCATGTCGTTTATCAACTCCAATATTAACATGATGGCCCATTTGTTTGGACTATGCGGCGGGTTTCTTCT
TTCGTTTTTATGCGTGCAAAAAAAAGAGCGGCGGTATTAA

Upstream 100 bases:

>100_bases
AATCATGTATGATAACCTCCTTTGCGTACGTACTATTTAAATGGTTTGTCTCATAAACGTGTTACTATAGATATACCAAA
ATGAAGAAAAGGGGCTCGGA

Downstream 100 bases:

>100_bases
CCGCCGCTTCAGATTGTTGACAAAATCCTAAAATGGTTTTCATTTTAGGATTTTGTCATCTTTTCAGCGTGATTGAAAAC
CCATGAAGTCTAGGAAGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFNSMS
IFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLA
FAVLMSFINSNINMMAHLFGLCGGFLLSFLCVQKKERRY

Sequences:

>Translated_199_residues
MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFNSMS
IFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLA
FAVLMSFINSNINMMAHLFGLCGGFLLSFLCVQKKERRY
>Mature_199_residues
MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFNSMS
IFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLA
FAVLMSFINSNINMMAHLFGLCGGFLLSFLCVQKKERRY

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDCA_BACSU (P96617)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   G69772
- RefSeq:   NP_388342.1
- ProteinModelPortal:   P96617
- EnsemblBacteria:   EBBACT00000003395
- GeneID:   939936
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04610
- NMPDR:   fig|224308.1.peg.461
- GenoList:   BSU04610
- GeneTree:   EBGT00050000001978
- HOGENOM:   HBG534994
- OMA:   FLANKVE
- ProtClustDB:   CLSK872733
- BioCyc:   BSUB:BSU04610-MONOMER
- InterPro:   IPR002610
- InterPro:   IPR022764
- PANTHER:   PTHR22936

Pfam domain/function: PF01694 Rhomboid

EC number: NA

Molecular weight: Translated: 22544; Mature: 22544

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: ACT_SITE 126-126 ACT_SITE 177-177

Signals:

None

Transmembrane regions:

HASH(0xb38b6cc)-; HASH(0xcfce89c)-; HASH(0xb44c21c)-; HASH(0xbee8df8)-; HASH(0xcbe4880)-; HASH(0xcacb0a0)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWR
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHH
LITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHCCHHH
VHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSNINMMAHLFG
EEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LCGGFLLSFLCVQKKERRY
HHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWR
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHH
LITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHCCHHH
VHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSNINMMAHLFG
EEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LCGGFLLSFLCVQKKERRY
HHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377