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The map label for this gene is ydbP

Identifier: 16077522

GI number: 16077522

Start: 507753

End: 508073

Strand: Reverse

Name: ydbP

Synonym: BSU04550

Alternate gene names: 16077522

Gene position: 508073-507753 (Counterclockwise)

Preceding gene: 16077528

Following gene: 16077520

Centisome position: 12.05

GC content: 38.63

Gene sequence:

>321_bases
ATGAAAAAAATCACAACAAACGAACAATTTAATGAACTGATTCAATCTGATAAAGAAATCATTGTAAAGTTTTATGCTGA
TTGGTGCCCAGACTGCACACGCATGAATATGTTCATCGGCGATATTTTGGAAGAATACAACCAAAACGACTGGTATGAGC
TGAATAAGGACGAGCTTCCTGACCTGGCTGAAAAATACCAAGTAATGGGCATTCCCAGCCTGCTTATTTTCAAGAACGGT
GAAAAAACAGCTCACCTTCACAGCGCCAATGCCAAAACGCCTGAAGAAGTGACTGAATTTTTATCTGAACATATAAGCTA
A

Upstream 100 bases:

>100_bases
AAATGATCTAATTATTTTTGGGCATGCTGATGTTGAATGCATTTGTATGTAATTCCTTTTTATTTTATATTAAAATGGCA
TTGAAAAGGAGATGTGACAT

Downstream 100 bases:

>100_bases
TTCGTTAAACAGCCTTATTTTATGTCGTCAGGCTCTACATGAACATGAACATGAGTGACATCGTGTTCATGTTTTATTTT
GTCTTCTACTTCATCCGCCA

Product: thioredoxin or thiol-disulfide isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEEYNQNDWYELNKDELPDLAEKYQVMGIPSLLIFKNG
EKTAHLHSANAKTPEEVTEFLSEHIS

Sequences:

>Translated_106_residues
MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEEYNQNDWYELNKDELPDLAEKYQVMGIPSLLIFKNG
EKTAHLHSANAKTPEEVTEFLSEHIS
>Mature_106_residues
MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEEYNQNDWYELNKDELPDLAEKYQVMGIPSLLIFKNG
EKTAHLHSANAKTPEEVTEFLSEHIS

Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain

Homologues:

Organism=Homo sapiens, GI95113651, Length=100, Percent_Identity=32, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082331, Length=103, Percent_Identity=34.9514563106796, Blast_Score=66, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323072, Length=85, Percent_Identity=42.3529411764706, Blast_Score=80, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321648, Length=101, Percent_Identity=27.7227722772277, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): YDBP_BACSU (P96611)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   C69772
- RefSeq:   NP_388336.1
- HSSP:   P10599
- ProteinModelPortal:   P96611
- SMR:   P96611
- EnsemblBacteria:   EBBACT00000002860
- GeneID:   939940
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04550
- NMPDR:   fig|224308.1.peg.455
- GenoList:   BSU04550
- GeneTree:   EBGT00050000000764
- HOGENOM:   HBG493509
- OMA:   CPDCTRM
- PhylomeDB:   P96611
- ProtClustDB:   CLSK886740
- BioCyc:   BSUB:BSU04550-MONOMER
- GO:   GO:0006810
- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- Gene3D:   G3DSA:3.40.30.10
- PANTHER:   PTHR10438
- PIRSF:   PIRSF000077

Pfam domain/function: PF00085 Thioredoxin; SSF52833 Thiordxn-like_fd

EC number: NA

Molecular weight: Translated: 12432; Mature: 12432

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00194 THIOREDOXIN_1; PS51352 THIOREDOXIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEEYNQNDWYELNKDELP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEECCHHCCH
DLAEKYQVMGIPSLLIFKNGEKTAHLHSANAKTPEEVTEFLSEHIS
HHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEEYNQNDWYELNKDELP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEECCHHCCH
DLAEKYQVMGIPSLLIFKNGEKTAHLHSANAKTPEEVTEFLSEHIS
HHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377