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The map label for this gene is ydcL

Identifier: 16077547

GI number: 16077547

Start: 529505

End: 530611

Strand: Reverse

Name: ydcL

Synonym: BSU04800

Alternate gene names: 16077547

Gene position: 530611-529505 (Counterclockwise)

Preceding gene: 16077548

Following gene: 16077528

Centisome position: 12.59

GC content: 31.26

Gene sequence:

>1107_bases
ATGTCTGTAAAAAAACTTGAAAATGGTCAATATCAAGTTGACGTTAGCTTTGGATTTGACCCGATTACTGGAGAAAGAAT
TAGGACGAGACCAGTAGCATCAACCAGAAAAGAGGCTTTAGAATTAGAAGCAAAATTAAGAAGAGAATTTCAAGAAGAAA
GAGCAAGAAAGTCCAGATCAGTAAGCTTTCCGACTCTAATTTCAATTTATTTAGCAAGTTGTGAAATAGATAGTAAACCA
AACTATTATCAGAATCAGAAGTACATTATAAACAAACATATATCTGATTACTTTTTGAAATCTGATATACAAAAAATCAC
ACATAGAGAAATAACTGATTTCAGAAAACATTTAATGGAAACAGGTCTAAGCAATAAATCGGTTAATAATATAATGACTA
GTCTAAGCAAAATTTTTGATACAGCTGTACATGAAGAAATCTTAAAAAGAAATCCGTGTGACAACGTTAAACGATTACCT
TTAACAAGAAAGAAAATGAAGTTTTGGAGACCAGAAGAATTCAAAAAATTTATTAGTTTAATTCCTCAAGATCAATTATT
GTTTAAAACCTTTTACACTGTTGCTTTTTTAACTGGACTAAGATGTGGTGAAATGCTCGCCCTGCAATGGAAAGATATTG
ACAAAATCTTATTAGAAATAGATGTGCATAAATCGTGCACCTGGCTTGATGGTCAATTTGTTGTTACTACTCCAAAAACT
AAAAATTCGATTCGGCGAGTTAGCATCAATAAAAAATTGCTTAAGCTACTAGAACGTTGGAAAGAAGCACAAGAAGAGTT
GTTTAATGAATTAGGTATTAGACATTCACATGATACCTATATCTTTCAATATAAAGATACACCTTCAAGAAAAGATATTT
TCAGTCGGAAAATTAAATACTTTTGCAAGGATAGCGATCTTACTCCTATACGTTTACATGATTTTAGACATTCACACGTT
GCACTATTAATACACCAAGGAGAAGATTACATAACAATTAAAGAGCGTTTAGGACATGGTTCTGTAAAAACAACAATTGA
TGTTTATGGACACCTATATCCAAACAAGCAAAAGGAAATGGCTGATAAATTAGATGACTTACTTTAG

Upstream 100 bases:

>100_bases
ACCATCATTTGTTACTGATTATAAACTTTCTCAAATTGGCTCATTTAGTAACAGAATCTATTCACACGAAATAAGCGCTT
TTGGTTAAAGGAGAAATAAA

Downstream 100 bases:

>100_bases
GTAAGTGGGCAGTTTGTGGGCAGTAAATCATTTGAAAATAAACACAAAAAAATACCAAGGGTGTCAAAACCCTTGGTATC
ATTGATGCGGCCGAGAGGAC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSVSFPTLISIYLASCEIDSKP
NYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLP
LTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKT
KNSIRRVSINKKLLKLLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFRHSHV
ALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL

Sequences:

>Translated_368_residues
MSVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSVSFPTLISIYLASCEIDSKP
NYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLP
LTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKT
KNSIRRVSINKKLLKLLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFRHSHV
ALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL
>Mature_367_residues
SVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSVSFPTLISIYLASCEIDSKPN
YYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPL
TRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTK
NSIRRVSINKKLLKLLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFRHSHVA
LLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): INT_BACSU (P96629)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   A69774
- RefSeq:   NP_388361.1
- ProteinModelPortal:   P96629
- SMR:   P96629
- EnsemblBacteria:   EBBACT00000000393
- GeneID:   938151
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04800
- NMPDR:   fig|224308.1.peg.480
- GenoList:   BSU04800
- GeneTree:   EBGT00050000000692
- HOGENOM:   HBG698676
- OMA:   SHAAFLV
- ProtClustDB:   CLSK806628
- BioCyc:   BSUB:BSU04800-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 43481; Mature: 43350

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00778 HIS_ACID_PHOSPHAT_2

Important sites: ACT_SITE 201-201 ACT_SITE 313-313 ACT_SITE 316-316 ACT_SITE 339-339 ACT_SITE 349-349

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRS
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSFPTLISIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLME
CCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCCCHHHHHHHHH
IPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKT
CCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHEEECCCCEEEECCEEEEECCCC
KNSIRRVSINKKLLKLLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH
FCKDSDLTPIRLHDFRHSHVALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEM
HCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEHHHCCCCCCEEEEEEHCCCCCCHHHHH
ADKLDDLL
HHHHHHCC
>Mature Secondary Structure 
SVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRS
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSFPTLISIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLME
CCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCCCHHHHHHHHH
IPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKT
CCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHEEECCCCEEEECCEEEEECCCC
KNSIRRVSINKKLLKLLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH
FCKDSDLTPIRLHDFRHSHVALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEM
HCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEHHHCCCCCCEEEEEEHCCCCCCHHHHH
ADKLDDLL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377