Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159901198

Identifier: 159901198

GI number: 159901198

Start: 5984649

End: 5985446

Strand: Direct

Name: 159901198

Synonym: Haur_4686

Alternate gene names: NA

Gene position: 5984649-5985446 (Clockwise)

Preceding gene: 159901190

Following gene: 159901199

Centisome position: 94.3

GC content: 54.39

Gene sequence:

>798_bases
ATGCCCTATATAATTGATGGTCATAATTTAATCGGTCAACTAGCGACTATTCGCCTGAACGACCCCGACGATGAAGCCAA
ATTGGTTCAACTGCTGCAACGCTTTGCGATTACCCGTAAAGTGAGTGTTTCAGTCGTCTTTGATCGTGGTCAATACACCC
AAGGCTCGCTTGGCGGCGGCGGGGTCAGTGTGCGTTTTGCCCGCTCGCCTAGCGATGCCGATGAGATTATTAAATCGCAA
CTTGTGCGCTTATCACGGCCCAGCGAGTGGGTTTTAGTCTCATCGGATCGGGCGATTACCTCGGTGGCTGATGCGGTTGG
CGCTCGGGTGATTACTGCGCGGGATTTTGCCGCGCTGCTTGAATCGATGGGTGCGGCTGACCCCAACGCCCCAACCCACC
AAGAAATGCATGCCCATGTTCGCCAAGATCAACTGCCAGAATGGCTAGATTTTTTTGGCATTGATAAAGAGAGTGCTGAG
AGCAAAGTTGACTTGACGCGCAAACCCAAGCCAAATCAACCAACGCAGCAACGCAGCGCCACCCAAGCCAAACGGCGCTC
GCCGCAGGCTGCTAAACCAATTGTTGTGCCACAGCCGCCAGAGCGTTGGCAATTGCCACCACGCCGCAAAGATCAGCCTG
ATCCGATTCCGCGTGATGCTGATGGCCGACCACGACTCTCGCGCGGTGGCAAAAACCCCCAAGCTAGCACTGGCGAACGG
CTGCATAAACCACCGCCGCCAGTTCACCCAGATGAGATTGATGAGTGGCTCGAATTTTTTGGGGCTGATGAGCAATAA

Upstream 100 bases:

>100_bases
TAGCGGCGAATCATAATCCCTGATTTACAGCAACGAAAACTAAACCGACTGATCATCCGTAGCTTACGGCGATCATACAA
ATATCCAAACTGAGGCTGGT

Downstream 100 bases:

>100_bases
CGAGGCTGGATCATGACAGAAACTGCAACCGAAGGCCGTAAAATCGATCATGTTAATATTGTGATTAAAGAAGATGTCAA
CGCCAAAGGCATAACAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPYIIDGHNLIGQLATIRLNDPDDEAKLVQLLQRFAITRKVSVSVVFDRGQYTQGSLGGGGVSVRFARSPSDADEIIKSQ
LVRLSRPSEWVLVSSDRAITSVADAVGARVITARDFAALLESMGAADPNAPTHQEMHAHVRQDQLPEWLDFFGIDKESAE
SKVDLTRKPKPNQPTQQRSATQAKRRSPQAAKPIVVPQPPERWQLPPRRKDQPDPIPRDADGRPRLSRGGKNPQASTGER
LHKPPPPVHPDEIDEWLEFFGADEQ

Sequences:

>Translated_265_residues
MPYIIDGHNLIGQLATIRLNDPDDEAKLVQLLQRFAITRKVSVSVVFDRGQYTQGSLGGGGVSVRFARSPSDADEIIKSQ
LVRLSRPSEWVLVSSDRAITSVADAVGARVITARDFAALLESMGAADPNAPTHQEMHAHVRQDQLPEWLDFFGIDKESAE
SKVDLTRKPKPNQPTQQRSATQAKRRSPQAAKPIVVPQPPERWQLPPRRKDQPDPIPRDADGRPRLSRGGKNPQASTGER
LHKPPPPVHPDEIDEWLEFFGADEQ
>Mature_264_residues
PYIIDGHNLIGQLATIRLNDPDDEAKLVQLLQRFAITRKVSVSVVFDRGQYTQGSLGGGGVSVRFARSPSDADEIIKSQL
VRLSRPSEWVLVSSDRAITSVADAVGARVITARDFAALLESMGAADPNAPTHQEMHAHVRQDQLPEWLDFFGIDKESAES
KVDLTRKPKPNQPTQQRSATQAKRRSPQAAKPIVVPQPPERWQLPPRRKDQPDPIPRDADGRPRLSRGGKNPQASTGERL
HKPPPPVHPDEIDEWLEFFGADEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29426; Mature: 29295

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYIIDGHNLIGQLATIRLNDPDDEAKLVQLLQRFAITRKVSVSVVFDRGQYTQGSLGGG
CCEEECCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC
GVSVRFARSPSDADEIIKSQLVRLSRPSEWVLVSSDRAITSVADAVGARVITARDFAALL
CEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ESMGAADPNAPTHQEMHAHVRQDQLPEWLDFFGIDKESAESKVDLTRKPKPNQPTQQRSA
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHH
TQAKRRSPQAAKPIVVPQPPERWQLPPRRKDQPDPIPRDADGRPRLSRGGKNPQASTGER
HHHHHCCCCCCCCEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC
LHKPPPPVHPDEIDEWLEFFGADEQ
CCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PYIIDGHNLIGQLATIRLNDPDDEAKLVQLLQRFAITRKVSVSVVFDRGQYTQGSLGGG
CEEECCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC
GVSVRFARSPSDADEIIKSQLVRLSRPSEWVLVSSDRAITSVADAVGARVITARDFAALL
CEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ESMGAADPNAPTHQEMHAHVRQDQLPEWLDFFGIDKESAESKVDLTRKPKPNQPTQQRSA
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHH
TQAKRRSPQAAKPIVVPQPPERWQLPPRRKDQPDPIPRDADGRPRLSRGGKNPQASTGER
HHHHHCCCCCCCCEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC
LHKPPPPVHPDEIDEWLEFFGADEQ
CCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA