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The map label for this gene is fni [H]

Identifier: 159901199

GI number: 159901199

Start: 5985459

End: 5986493

Strand: Direct

Name: fni [H]

Synonym: Haur_4687

Alternate gene names: 159901199

Gene position: 5985459-5986493 (Clockwise)

Preceding gene: 159901198

Following gene: 159901200

Centisome position: 94.31

GC content: 50.82

Gene sequence:

>1035_bases
ATGACAGAAACTGCAACCGAAGGCCGTAAAATCGATCATGTTAATATTGTGATTAAAGAAGATGTCAACGCCAAAGGCAT
AACAACTGGCTTTGGGCGTTATCATTTTGAGCATGATGCCCTGCCAGAATTGGATATGCGCAGGATTGATTTGAGCACAA
CATTTTTGGGCAAGCAGCTCAAAGCACCATTTTTAATTAGCTCGATGACCGGTGGTGCTGCGCCAACTGAGAAAATTAAT
TTACAATTGGCCGAAGCCGCTCAAGCCTTGGGCGTGGCAATGGGTGTTGGCTCGCAACGGGCAGCAATTTTCGACCCAAG
TGTTGCTGCTTCGTATCAAGTGCGCCGCGTTGCACCTGATATTGCCTTGTTTGCCAATTTGGGCGCGGTGCAACTCAACT
ATGGCTATGGCGTTGAACAATGCCTACGCGCAGTTGATATGATTCAAGCTGATGCGCTGATTTTGCATTTTAATGCGTTG
CAAGAGGCCGTCCAGCCTGAAGGCGACACCAATTTTGCAGGCTTATTGCAAAAAGTTGAGGCAATCTGTCGTGCTTTGCC
CGTGCCAGTTATCGCCAAGGAAGTTGGCAACGGCATTGGAGCCAAAACTGCCAAGCGTTTAGTTGAAGCTGGCGTGCAGG
CGATCGATGTGGCGGGGGCTGGTGGCACAAGTTGGAGCGAAGTCGAACGCTTCCGCCATCGCACTCAGGCAGGCCAACGG
ATTGCTGCAACCTTCGCAGGTTGGGGTATTCCAACCACCGAGGCGATTAAGCAAGTGCGGGCAGCGTTGCCAAACATTGG
GATTATTGGTTCTGGTGGATTGCGCAGCGGGCTAGATTTGGCCAAAGCGATTGCGCTCGGCGCTGATTTAGGCGCATCTG
CTGCGCCAAATTTGTTGGCCCAAAACGATGGCGGCAGCGAAGCTGTCTACGAAGCTATTTTGGCAGTAATTGACGAATTG
CGGATCAGCATGTTTTGCACTGGAGCGGCCAATCTGGCAGAATTACGCCAAACACCTTTATACTCGGTTGGCTAA

Upstream 100 bases:

>100_bases
TGGCGAACGGCTGCATAAACCACCGCCGCCAGTTCACCCAGATGAGATTGATGAGTGGCTCGAATTTTTTGGGGCTGATG
AGCAATAACGAGGCTGGATC

Downstream 100 bases:

>100_bases
GTTTTTCGAGAAAGTAGTTTCATGAGTAAAACCTTGGATATTATCATTCGGGCTTTGGAGCCAGATGATTACCTTGACCT
TGCAACCATATTTAGCGGGC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTETATEGRKIDHVNIVIKEDVNAKGITTGFGRYHFEHDALPELDMRRIDLSTTFLGKQLKAPFLISSMTGGAAPTEKIN
LQLAEAAQALGVAMGVGSQRAAIFDPSVAASYQVRRVAPDIALFANLGAVQLNYGYGVEQCLRAVDMIQADALILHFNAL
QEAVQPEGDTNFAGLLQKVEAICRALPVPVIAKEVGNGIGAKTAKRLVEAGVQAIDVAGAGGTSWSEVERFRHRTQAGQR
IAATFAGWGIPTTEAIKQVRAALPNIGIIGSGGLRSGLDLAKAIALGADLGASAAPNLLAQNDGGSEAVYEAILAVIDEL
RISMFCTGAANLAELRQTPLYSVG

Sequences:

>Translated_344_residues
MTETATEGRKIDHVNIVIKEDVNAKGITTGFGRYHFEHDALPELDMRRIDLSTTFLGKQLKAPFLISSMTGGAAPTEKIN
LQLAEAAQALGVAMGVGSQRAAIFDPSVAASYQVRRVAPDIALFANLGAVQLNYGYGVEQCLRAVDMIQADALILHFNAL
QEAVQPEGDTNFAGLLQKVEAICRALPVPVIAKEVGNGIGAKTAKRLVEAGVQAIDVAGAGGTSWSEVERFRHRTQAGQR
IAATFAGWGIPTTEAIKQVRAALPNIGIIGSGGLRSGLDLAKAIALGADLGASAAPNLLAQNDGGSEAVYEAILAVIDEL
RISMFCTGAANLAELRQTPLYSVG
>Mature_343_residues
TETATEGRKIDHVNIVIKEDVNAKGITTGFGRYHFEHDALPELDMRRIDLSTTFLGKQLKAPFLISSMTGGAAPTEKINL
QLAEAAQALGVAMGVGSQRAAIFDPSVAASYQVRRVAPDIALFANLGAVQLNYGYGVEQCLRAVDMIQADALILHFNALQ
EAVQPEGDTNFAGLLQKVEAICRALPVPVIAKEVGNGIGAKTAKRLVEAGVQAIDVAGAGGTSWSEVERFRHRTQAGQRI
AATFAGWGIPTTEAIKQVRAALPNIGIIGSGGLRSGLDLAKAIALGADLGASAAPNLLAQNDGGSEAVYEAILAVIDELR
ISMFCTGAANLAELRQTPLYSVG

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 36087; Mature: 35956

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETATEGRKIDHVNIVIKEDVNAKGITTGFGRYHFEHDALPELDMRRIDLSTTFLGKQL
CCCCCCCCCEEEEEEEEEECCCCCCCCEECCCCEECCCCCCCCCCHHHCCHHHHHHHHHH
KAPFLISSMTGGAAPTEKINLQLAEAAQALGVAMGVGSQRAAIFDPSVAASYQVRRVAPD
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCH
IALFANLGAVQLNYGYGVEQCLRAVDMIQADALILHFNALQEAVQPEGDTNFAGLLQKVE
HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCCCCHHHHHHHHH
AICRALPVPVIAKEVGNGIGAKTAKRLVEAGVQAIDVAGAGGTSWSEVERFRHRTQAGQR
HHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
IAATFAGWGIPTTEAIKQVRAALPNIGIIGSGGLRSGLDLAKAIALGADLGASAAPNLLA
HHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEE
QNDGGSEAVYEAILAVIDELRISMFCTGAANLAELRQTPLYSVG
CCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TETATEGRKIDHVNIVIKEDVNAKGITTGFGRYHFEHDALPELDMRRIDLSTTFLGKQL
CCCCCCCCEEEEEEEEEECCCCCCCCEECCCCEECCCCCCCCCCHHHCCHHHHHHHHHH
KAPFLISSMTGGAAPTEKINLQLAEAAQALGVAMGVGSQRAAIFDPSVAASYQVRRVAPD
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCH
IALFANLGAVQLNYGYGVEQCLRAVDMIQADALILHFNALQEAVQPEGDTNFAGLLQKVE
HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCCCCHHHHHHHHH
AICRALPVPVIAKEVGNGIGAKTAKRLVEAGVQAIDVAGAGGTSWSEVERFRHRTQAGQR
HHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
IAATFAGWGIPTTEAIKQVRAALPNIGIIGSGGLRSGLDLAKAIALGADLGASAAPNLLA
HHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEE
QNDGGSEAVYEAILAVIDELRISMFCTGAANLAELRQTPLYSVG
CCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]