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The map label for this gene is pepF1 [H]

Identifier: 159901194

GI number: 159901194

Start: 5979222

End: 5981042

Strand: Reverse

Name: pepF1 [H]

Synonym: Haur_4682

Alternate gene names: 159901194

Gene position: 5981042-5979222 (Counterclockwise)

Preceding gene: 159901195

Following gene: 159901193

Centisome position: 94.24

GC content: 51.46

Gene sequence:

>1821_bases
ATGACTACCCAAACGCTCCCACACTGGGATCTTTCAGTTGTCTACCCCAGCCTAGACTCGCCTGAATTTGCCGCAGGCTT
TCAACGGATCAAGCAACAAGTGAGCGATCTCAAAAGCCTGTTTGATCAAGCTGCTATCCAACGTAGTGAAAACCAAGTGC
TTGATTCCGCCACCATCGCGACCTTTGAAACCGTAACTACTGCCTTCAACCAAACCCAAGATGCGATGATGACCAATTTT
AGCTATGTGATGGGCTTTGTCGCCACCGACACCCGTGATACGCTAGCCCAAGCTCGGTTTAGCGAAATGCAACAATTGGG
CATGCAATTGCAACAATTGGGTCTGCGCTGGGTCGCTTGGATTGGTGGCTTGGATATTGATCAATTGATTGCTCAATCAA
GTTTGGCCGCCGAGCATGCCTTTATTTTGCACAAAACCAAGCAAGAAGCGTTGCACCTGATGTCGCCAGCCGAAGAAGTG
TTGGCAGTCGAACTCAATTTGAGCGGTGGCAGCGCTTGGAGCAAATTGCACACGGTGGTTAGCTCACAGCTTAGCGTGCC
AGTCACGCATGCTGGCGAAACCAAGCATATGCCAATGAGCATGGTACGCAATTTGGCGTTTGATCCAAATCGTGAAGTTC
GGCGCAGCGCTTACGAGGCCGAATTGGCTGGCTGGAAAGGGGTCGAAACGCCCATGGCAGCGGCAATCAACAGCATCAAA
GGCCAAGTTAACACGTTGGCTGGCCATCGTGGTTGGGCTACAGCGTTGGATGAGGCGCTGGCGGATAACAATATTGATCG
CCAAACCCTTGATGCAATGTTAACCGCCGCCCGCGAAACCTTCCCAGATTTCCGCCGCTACTTGCGGGCCAAAGCACGGT
TGGTGGGCAGCGAACGGTTGGCATGGTTCGATCTCTTCGCGCCGATTGGCAACGATGTCAGCACTTGGGAATACGCCGAA
TCGGAAGCCTTCATTTTGGAGCATTTCGGCAGCTATTCACAACGCTTGCGTGATTATGCCGCCCGCGCCTTCGATGAAAA
CTGGATCGATGCTGAGCCACGGGCTGGCAAACGTGATGGCGCGTTCTGTATGCGTTTAGTTGGCGATCAATCACGCATCC
TGAGCAACTATAAGCCCTCGTTTGCTGGAATGCGCACCCTTGCACATGAGTTGGGTCACGGCTATCATAACCTTAACTTA
GCCGAAACCACCCCATTGCAGCGCCAAATTCCGATGACCTTGGCTGAAACTGCCAGCATTTTCTGTGAAACGATTGTGCG
CAACGCCGCCTTGGCTAAGGCTGATGCTGCAACCCAATTAGCAATCATCGAATCATCGTTGCAAAATAGCTGCCAGTTGG
TTGTCGATATCAGCAGCCGCTTTATTTTCGAGCAAAGCCTGTTCGAAGCCCGTCAAGCGCGTGAGCTAAGCGTGCAGGAA
ATTAACGACCTAATGCTCAAGGCCCAAGCTGAAACCTATGGCGATGGCTTGGACGAACAGTACTACCATCCGTATATGTG
GGCGGTCAAAGGTCATTACTATAGCACTGAACGCTCATTTTACAATTATCCCTATATGTTTGGCTTATTGTTCGGCTTAG
GCTTGTATGCCCAGTATGTAGCAACACCCGATGAGTTTCGGGCCAAATACGATGATTTATTGGCGGCTTCGGGCAAGCAT
GACGCAGCAACCTTGGCCGAACGTTTTGGGATTGATATTCGGACCCCCGATTTTTGGCGGGCAAGTTTGGCCACCATCAA
GGCCGATATTGACCGTTTCGTTGAGCTAAGCGAGCAGTTGTTGGATACCGCTGCCCACTAA

Upstream 100 bases:

>100_bases
GTCTTGCCCAACTTCCGAAATGAACCACAAAACGAACGCCCACGCTAATCAGCGGGGCGTTGCGGCTTTTTAGGGTTGTT
GATGAGAAAGGATCAGCCAA

Downstream 100 bases:

>100_bases
ACGAAGCCAGCGTCCGCCAATGCACAAGGAGTTTTAGCTATGCGACGCAGGTTTGTGCTATTGGTACTTTTGCTGGTGCT
AGTTGGATGTGGTGGAGCGG

Product: peptidase M3A and M3B thimet/oligopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MTTQTLPHWDLSVVYPSLDSPEFAAGFQRIKQQVSDLKSLFDQAAIQRSENQVLDSATIATFETVTTAFNQTQDAMMTNF
SYVMGFVATDTRDTLAQARFSEMQQLGMQLQQLGLRWVAWIGGLDIDQLIAQSSLAAEHAFILHKTKQEALHLMSPAEEV
LAVELNLSGGSAWSKLHTVVSSQLSVPVTHAGETKHMPMSMVRNLAFDPNREVRRSAYEAELAGWKGVETPMAAAINSIK
GQVNTLAGHRGWATALDEALADNNIDRQTLDAMLTAARETFPDFRRYLRAKARLVGSERLAWFDLFAPIGNDVSTWEYAE
SEAFILEHFGSYSQRLRDYAARAFDENWIDAEPRAGKRDGAFCMRLVGDQSRILSNYKPSFAGMRTLAHELGHGYHNLNL
AETTPLQRQIPMTLAETASIFCETIVRNAALAKADAATQLAIIESSLQNSCQLVVDISSRFIFEQSLFEARQARELSVQE
INDLMLKAQAETYGDGLDEQYYHPYMWAVKGHYYSTERSFYNYPYMFGLLFGLGLYAQYVATPDEFRAKYDDLLAASGKH
DAATLAERFGIDIRTPDFWRASLATIKADIDRFVELSEQLLDTAAH

Sequences:

>Translated_606_residues
MTTQTLPHWDLSVVYPSLDSPEFAAGFQRIKQQVSDLKSLFDQAAIQRSENQVLDSATIATFETVTTAFNQTQDAMMTNF
SYVMGFVATDTRDTLAQARFSEMQQLGMQLQQLGLRWVAWIGGLDIDQLIAQSSLAAEHAFILHKTKQEALHLMSPAEEV
LAVELNLSGGSAWSKLHTVVSSQLSVPVTHAGETKHMPMSMVRNLAFDPNREVRRSAYEAELAGWKGVETPMAAAINSIK
GQVNTLAGHRGWATALDEALADNNIDRQTLDAMLTAARETFPDFRRYLRAKARLVGSERLAWFDLFAPIGNDVSTWEYAE
SEAFILEHFGSYSQRLRDYAARAFDENWIDAEPRAGKRDGAFCMRLVGDQSRILSNYKPSFAGMRTLAHELGHGYHNLNL
AETTPLQRQIPMTLAETASIFCETIVRNAALAKADAATQLAIIESSLQNSCQLVVDISSRFIFEQSLFEARQARELSVQE
INDLMLKAQAETYGDGLDEQYYHPYMWAVKGHYYSTERSFYNYPYMFGLLFGLGLYAQYVATPDEFRAKYDDLLAASGKH
DAATLAERFGIDIRTPDFWRASLATIKADIDRFVELSEQLLDTAAH
>Mature_605_residues
TTQTLPHWDLSVVYPSLDSPEFAAGFQRIKQQVSDLKSLFDQAAIQRSENQVLDSATIATFETVTTAFNQTQDAMMTNFS
YVMGFVATDTRDTLAQARFSEMQQLGMQLQQLGLRWVAWIGGLDIDQLIAQSSLAAEHAFILHKTKQEALHLMSPAEEVL
AVELNLSGGSAWSKLHTVVSSQLSVPVTHAGETKHMPMSMVRNLAFDPNREVRRSAYEAELAGWKGVETPMAAAINSIKG
QVNTLAGHRGWATALDEALADNNIDRQTLDAMLTAARETFPDFRRYLRAKARLVGSERLAWFDLFAPIGNDVSTWEYAES
EAFILEHFGSYSQRLRDYAARAFDENWIDAEPRAGKRDGAFCMRLVGDQSRILSNYKPSFAGMRTLAHELGHGYHNLNLA
ETTPLQRQIPMTLAETASIFCETIVRNAALAKADAATQLAIIESSLQNSCQLVVDISSRFIFEQSLFEARQARELSVQEI
NDLMLKAQAETYGDGLDEQYYHPYMWAVKGHYYSTERSFYNYPYMFGLLFGLGLYAQYVATPDEFRAKYDDLLAASGKHD
AATLAERFGIDIRTPDFWRASLATIKADIDRFVELSEQLLDTAAH

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 67929; Mature: 67798

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQTLPHWDLSVVYPSLDSPEFAAGFQRIKQQVSDLKSLFDQAAIQRSENQVLDSATIA
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFETVTTAFNQTQDAMMTNFSYVMGFVATDTRDTLAQARFSEMQQLGMQLQQLGLRWVAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGGLDIDQLIAQSSLAAEHAFILHKTKQEALHLMSPAEEVLAVELNLSGGSAWSKLHTVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
SSQLSVPVTHAGETKHMPMSMVRNLAFDPNREVRRSAYEAELAGWKGVETPMAAAINSIK
HHHCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GQVNTLAGHRGWATALDEALADNNIDRQTLDAMLTAARETFPDFRRYLRAKARLVGSERL
HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AWFDLFAPIGNDVSTWEYAESEAFILEHFGSYSQRLRDYAARAFDENWIDAEPRAGKRDG
HHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
AFCMRLVGDQSRILSNYKPSFAGMRTLAHELGHGYHNLNLAETTPLQRQIPMTLAETASI
HHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHH
FCETIVRNAALAKADAATQLAIIESSLQNSCQLVVDISSRFIFEQSLFEARQARELSVQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHH
INDLMLKAQAETYGDGLDEQYYHPYMWAVKGHYYSTERSFYNYPYMFGLLFGLGLYAQYV
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHH
ATPDEFRAKYDDLLAASGKHDAATLAERFGIDIRTPDFWRASLATIKADIDRFVELSEQL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LDTAAH
HHHCCC
>Mature Secondary Structure 
TTQTLPHWDLSVVYPSLDSPEFAAGFQRIKQQVSDLKSLFDQAAIQRSENQVLDSATIA
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFETVTTAFNQTQDAMMTNFSYVMGFVATDTRDTLAQARFSEMQQLGMQLQQLGLRWVAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGGLDIDQLIAQSSLAAEHAFILHKTKQEALHLMSPAEEVLAVELNLSGGSAWSKLHTVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
SSQLSVPVTHAGETKHMPMSMVRNLAFDPNREVRRSAYEAELAGWKGVETPMAAAINSIK
HHHCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GQVNTLAGHRGWATALDEALADNNIDRQTLDAMLTAARETFPDFRRYLRAKARLVGSERL
HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AWFDLFAPIGNDVSTWEYAESEAFILEHFGSYSQRLRDYAARAFDENWIDAEPRAGKRDG
HHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
AFCMRLVGDQSRILSNYKPSFAGMRTLAHELGHGYHNLNLAETTPLQRQIPMTLAETASI
HHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHH
FCETIVRNAALAKADAATQLAIIESSLQNSCQLVVDISSRFIFEQSLFEARQARELSVQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHH
INDLMLKAQAETYGDGLDEQYYHPYMWAVKGHYYSTERSFYNYPYMFGLLFGLGLYAQYV
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHH
ATPDEFRAKYDDLLAASGKHDAATLAERFGIDIRTPDFWRASLATIKADIDRFVELSEQL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LDTAAH
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7798200; 9209029 [H]