Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159901031

Identifier: 159901031

GI number: 159901031

Start: 5785397

End: 5786002

Strand: Reverse

Name: 159901031

Synonym: Haur_4518

Alternate gene names: NA

Gene position: 5786002-5785397 (Counterclockwise)

Preceding gene: 159901032

Following gene: 159901030

Centisome position: 91.17

GC content: 50.33

Gene sequence:

>606_bases
ATGGGCTTGTTGGCATCACTCTTTGGATGTGGATCAAGTGCTGTTCCCGAGGCCGTGCGTAACGGCCTCGACGAACAGTC
GATTCAAACAATTGGCACACTCGATATCAGCCCGTGGTTGGGTGACAAACCACGCTATCGCCGTTTAAGCTTGATTCGAG
CGCAAACTGTGGCTGGCGAACCAACCACGATTGCCTACCTTGAGCCAAATGCTGATGCAGCGGCGTTTGCGCTCCCTTTG
ACGCAAACCTTTCCCGAAGCCCCGCTGCAAACAGCCTTATTCGAGATCGATGGCTATCGGCTAATTGTTGGCTTGGTTGA
TGATCGTGTTATGGGTGAACTCACAACGATCGAATTTGAACGTGAAGAACCAGATCAAACTCGTTGGTTAGAAGCATTAA
AAGTTAGTAAACTTAATAAACGGACATTTGTGATTCCAATCGCCCCGAATGAACAAGCGCAATGGCCAACGGTCCAACGG
ATTGCGGTGAACACTCGTGAATCGCGCCAACGTGGGGTCGATGATCGCAATGCTTCGGGCCACGAATGGGAACATCGATA
TTCCAACCCGATTGCAATTGACAGTACCTTTGCGGTTGTACCGTAG

Upstream 100 bases:

>100_bases
CGATGTGGTTAGCATCATTAAAAACAGCTATCCCCAAGTTGCTCCATACCTGAAGTAATCCATGCAGGTTGTGTGTAGAG
TATGGTGGGGGATGCTTGCA

Downstream 100 bases:

>100_bases
GAGATTAGGGCATGACAACCCCCCAACCCTTGGTCGCAGTAACACTTTCACGCAGTGAATTGCTGTTAATTAGTGCACTC
TTGAAAGCTCCCGCTTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MGLLASLFGCGSSAVPEAVRNGLDEQSIQTIGTLDISPWLGDKPRYRRLSLIRAQTVAGEPTTIAYLEPNADAAAFALPL
TQTFPEAPLQTALFEIDGYRLIVGLVDDRVMGELTTIEFEREEPDQTRWLEALKVSKLNKRTFVIPIAPNEQAQWPTVQR
IAVNTRESRQRGVDDRNASGHEWEHRYSNPIAIDSTFAVVP

Sequences:

>Translated_201_residues
MGLLASLFGCGSSAVPEAVRNGLDEQSIQTIGTLDISPWLGDKPRYRRLSLIRAQTVAGEPTTIAYLEPNADAAAFALPL
TQTFPEAPLQTALFEIDGYRLIVGLVDDRVMGELTTIEFEREEPDQTRWLEALKVSKLNKRTFVIPIAPNEQAQWPTVQR
IAVNTRESRQRGVDDRNASGHEWEHRYSNPIAIDSTFAVVP
>Mature_200_residues
GLLASLFGCGSSAVPEAVRNGLDEQSIQTIGTLDISPWLGDKPRYRRLSLIRAQTVAGEPTTIAYLEPNADAAAFALPLT
QTFPEAPLQTALFEIDGYRLIVGLVDDRVMGELTTIEFEREEPDQTRWLEALKVSKLNKRTFVIPIAPNEQAQWPTVQRI
AVNTRESRQRGVDDRNASGHEWEHRYSNPIAIDSTFAVVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22359; Mature: 22228

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLASLFGCGSSAVPEAVRNGLDEQSIQTIGTLDISPWLGDKPRYRRLSLIRAQTVAGE
CCHHHHHHCCCCCCHHHHHHCCCCHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
PTTIAYLEPNADAAAFALPLTQTFPEAPLQTALFEIDGYRLIVGLVDDRVMGELTTIEFE
CCEEEEECCCCCCEEEEECCHHCCCCCCHHHHHEEECCEEEEEEECCCHHHCCEEEEEEC
REEPDQTRWLEALKVSKLNKRTFVIPIAPNEQAQWPTVQRIAVNTRESRQRGVDDRNASG
CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCC
HEWEHRYSNPIAIDSTFAVVP
CCCHHHCCCCEEECCEEEECC
>Mature Secondary Structure 
GLLASLFGCGSSAVPEAVRNGLDEQSIQTIGTLDISPWLGDKPRYRRLSLIRAQTVAGE
CHHHHHHCCCCCCHHHHHHCCCCHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
PTTIAYLEPNADAAAFALPLTQTFPEAPLQTALFEIDGYRLIVGLVDDRVMGELTTIEFE
CCEEEEECCCCCCEEEEECCHHCCCCCCHHHHHEEECCEEEEEEECCCHHHCCEEEEEEC
REEPDQTRWLEALKVSKLNKRTFVIPIAPNEQAQWPTVQRIAVNTRESRQRGVDDRNASG
CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCC
HEWEHRYSNPIAIDSTFAVVP
CCCHHHCCCCEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA