Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900979

Identifier: 159900979

GI number: 159900979

Start: 5711556

End: 5712794

Strand: Reverse

Name: 159900979

Synonym: Haur_4466

Alternate gene names: NA

Gene position: 5712794-5711556 (Counterclockwise)

Preceding gene: 159900985

Following gene: 159900975

Centisome position: 90.01

GC content: 50.85

Gene sequence:

>1239_bases
ATGCAATGGAGCATGCGGCTACGTTCGCTCTGCATTCCTGCTCTATTGACGTTCATGATCGCTGGTTTTGCCGCGTTTAT
GTTCAGTCAACCGCACGCTAGCTTCGCTCAAGATAGCGAAGGTTCACCACCTGATTGCCCTGGCTTGGGTGATCTCGGTG
CTTGGTTCACCGCTGAAAACGAAGTTGTTATCATCAATCGTTCGAGCGTTTGTACCTACGAGGTTGGCACGGCTGTCTAT
AAAAAATTCGATGCCGTGACCGATCATCAGGTGCTTTTCGCCTCGCAAACTGATCAACTGCCCCCCAATACCCAACGCAC
CTATCGCCAAACCTTAAACCCTTGTGCCGGCCAAATGAGCGCCTTCTTCGGGCCGGTGCTGCCAAGTTTAATGAACCAAC
GCTACAACGAGCGCCTGTTGGCAGCCAATCATTTTGGTGGCACGAATTATTGTTTGCGCAGTTGTGACTCGGGTCAATTG
CTAGGTTGGGTCGGGGTCAGCTCGAATGCAATTTTGCAAAGCTCAGCTCGCATCGGCATGAAAATCACAGGTGCACCGCC
ATGGCAAGTTGAGTTTCGCCTGACTGGCCCGATGACCATGACTCACATCGAGCAAATTGATCCCTATTTGTTCACAGGCA
ATACCTGGAATTTAAGCGACGTACCAATTGGCGATTACACCATGAAAGCCACCTATATTGCCAACCCAGGCGTGCGCTGC
GATAGCAAAACGATTCAATTTAAAGTTGCTAGCACCCCGCTGCCAACTCCCACGCCATCGCCAACCCCCACCCCAGTGCC
AGTCTATCGGGCGCGAATCGTGCTCAATTCATTGGTTATTTGGGATGCGAATCGTGGTGATGGGCTAACCAATTTCGATG
GATTTGTCCGGCCAGGCGATACAATTTCCTACACCCTTGCCATTCAAAATACTGGCAACATGCCCCTGACCAATGTGCAA
ATCGTCGATCCCTTCTCGAATGCGACCAGTTTTGCGGGATTAAGCCTACCAGCACCCCAAATTCAGCCAAGCCCCGATGG
TTCCGGCCCGATTGGCTGGCAAATTCCCGTCTTGCAGCCCAACCAGCGCATCGATGCCACCTTCCATGTGATCGTCAAAG
AATCGATTCGCGGCACCTATACCCAAATTATCAATAATGCTAGCTTTGCCAGCAACGAAACTGGCCAACAGTGGAGCAAT
ACCACTGAGCATATTTACAATCCAGATTTTGATCAATAA

Upstream 100 bases:

>100_bases
GCAGATTGATTGAATAGCTAGCTAGTCATTGACATGACTTAAGGCCTGAGTCATAATAGTCCTACCGACATACCAACCAA
TCATCGCAGGATGGTGTTTT

Downstream 100 bases:

>100_bases
TTTGGGGATCGGTTGTTGGGGATCGGGGGTCAACTACCCAGCGACCGGGCAAAACATCAGATCCACAGCTCGCTAATTTC
ATCGGAAACCGCCTGATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY
KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL
LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC
DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ
IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN
TTEHIYNPDFDQ

Sequences:

>Translated_412_residues
MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY
KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL
LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC
DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ
IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN
TTEHIYNPDFDQ
>Mature_412_residues
MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY
KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL
LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC
DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ
IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN
TTEHIYNPDFDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45146; Mature: 45146

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAEN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
EVVIINRSSVCTYEVGTAVYKKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMS
CEEEEECCCEEEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCHHHHHHH
AFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQLLGWVGVSSNAILQSSARIGM
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCE
KITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC
EEECCCCEEEEEEEECCEEEHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC
DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGD
CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC
TISYTLAIQNTGNMPLTNVQIVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQP
CEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
NQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSNTTEHIYNPDFDQ
CCCCCCEEEEEEHHHHCHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCCCCCC
>Mature Secondary Structure
MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAEN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
EVVIINRSSVCTYEVGTAVYKKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMS
CEEEEECCCEEEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCHHHHHHH
AFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQLLGWVGVSSNAILQSSARIGM
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCE
KITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC
EEECCCCEEEEEEEECCEEEHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC
DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGD
CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC
TISYTLAIQNTGNMPLTNVQIVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQP
CEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
NQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSNTTEHIYNPDFDQ
CCCCCCEEEEEEHHHHCHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA