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The map label for this gene is yfbE [C]

Identifier: 159900835

GI number: 159900835

Start: 5519482

End: 5520660

Strand: Direct

Name: yfbE [C]

Synonym: Haur_4322

Alternate gene names: 159900835

Gene position: 5519482-5520660 (Clockwise)

Preceding gene: 159900833

Following gene: 159900836

Centisome position: 86.97

GC content: 53.52

Gene sequence:

>1179_bases
ATGGCTGATTTACGTCCTGCAATCCTCGGCGGCACGCCTTTGGCAACGTCGCCAATTCGCTTAGTTCGTCCGGTTTTACC
AGAGTTTGCCACCTTAGCCGCCGATGTTGAGCAAACTTTAATCAGCGGCATGGTCACTAAGGGCCAGCATTTAGTGGCGT
TTGAACAAGCAGTCGCCGCCCATCTAGGCGTGGCGCATGCGATTGCGGTTTCAAGCTGCACCACCGGCTTGGCCTTAGTC
TATCGCGCTTTAGGCTTAAACGGGCCAGTAATTGTGCCCAGTTTTACCTTTATGGCTACCGTCAGCGCCTTGATTTGGGC
TGGCGCAACCCCGCGCTTTGTGGAAATTGACCCCACGACCACCAATATCGATTTGGATGCAGTGCGCGCAGCACTCACTC
CTGACGTGCAGGCGATTGTGGCCGTGCACAATTTTGGCAATCCAGCAGCAATCGCTGAACTCGAAGCAATCGCCGCCGAT
GCTGGAATTCCCTTAATTTTTGATGCGGCCCATGGCTTTGGGGCGCAATACGATGGGCGGCCCGTCGGCGGATTTGGCAC
TGCCGAATGTTTCAGTCTTAGCCCAACCAAGCTCTTGATCGCTGGCGAAGGCGGAATCGTCGCCACCAACAATGATGAGT
TAGCCCACAAAATTCGTACAGGCCGCGAATATGGCAACGATGGCAAGTATGGCAGCGATTGGGCTGGCTTGAATGCTCGT
ATGGCCGAATATAACGCGATTATGGGGCGCTACAGCCTTGAGCAATTGGAGCAAGCCGCCCGCCAACGCAACCAATACGC
TGCGCTCTATTGGGCGGCCTTGTTTGCCACGCCTGGCATTGATTTTCAAAAAGTGCGCCCAAACGATCGTTGCTCTTACA
AAGATTATTCAATCACGATCGAAGCCAGCGAATTTGGCATCAGTCGCGATTTGCTGAGCAAAGCTTTGGCCGCTGAGGGC
ATTGATAGTCGTGCCTATTACGATCCGCCAGTTCATCGCCATGCTGCCTACGCTCAATTTGCGCCCACCGAGGGCAGTTT
GCCCAAAACCGACTGGCTGGCACAATCGAGCTTGAGCTTGCCGATTCACTCGGAAATGGAGTTCAGTACAATCGAAACCG
TTTGCGCAGCGATCAAACGGATTCAGCTGTTTGGCGAGGAAATCATAGCAAAACAATAA

Upstream 100 bases:

>100_bases
GCGAAAGAACTAATCGTTGCCCAACACACAAAGGGGATAGCCACTATTTGCCAGCCTATGCTATCCTGAGGTTAATCATA
CCTATTAATGAGTGTAGTTT

Downstream 100 bases:

>100_bases
CCTGCTTCGTTTAACGCAGAGGCGCAGAGGTTATTGTAGTTCCAATTGAAAACTCTGCGTCTCTGCGTTATGAATGACTG
ATTCAAGGTCACCGTTGTGG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MADLRPAILGGTPLATSPIRLVRPVLPEFATLAADVEQTLISGMVTKGQHLVAFEQAVAAHLGVAHAIAVSSCTTGLALV
YRALGLNGPVIVPSFTFMATVSALIWAGATPRFVEIDPTTTNIDLDAVRAALTPDVQAIVAVHNFGNPAAIAELEAIAAD
AGIPLIFDAAHGFGAQYDGRPVGGFGTAECFSLSPTKLLIAGEGGIVATNNDELAHKIRTGREYGNDGKYGSDWAGLNAR
MAEYNAIMGRYSLEQLEQAARQRNQYAALYWAALFATPGIDFQKVRPNDRCSYKDYSITIEASEFGISRDLLSKALAAEG
IDSRAYYDPPVHRHAAYAQFAPTEGSLPKTDWLAQSSLSLPIHSEMEFSTIETVCAAIKRIQLFGEEIIAKQ

Sequences:

>Translated_392_residues
MADLRPAILGGTPLATSPIRLVRPVLPEFATLAADVEQTLISGMVTKGQHLVAFEQAVAAHLGVAHAIAVSSCTTGLALV
YRALGLNGPVIVPSFTFMATVSALIWAGATPRFVEIDPTTTNIDLDAVRAALTPDVQAIVAVHNFGNPAAIAELEAIAAD
AGIPLIFDAAHGFGAQYDGRPVGGFGTAECFSLSPTKLLIAGEGGIVATNNDELAHKIRTGREYGNDGKYGSDWAGLNAR
MAEYNAIMGRYSLEQLEQAARQRNQYAALYWAALFATPGIDFQKVRPNDRCSYKDYSITIEASEFGISRDLLSKALAAEG
IDSRAYYDPPVHRHAAYAQFAPTEGSLPKTDWLAQSSLSLPIHSEMEFSTIETVCAAIKRIQLFGEEIIAKQ
>Mature_391_residues
ADLRPAILGGTPLATSPIRLVRPVLPEFATLAADVEQTLISGMVTKGQHLVAFEQAVAAHLGVAHAIAVSSCTTGLALVY
RALGLNGPVIVPSFTFMATVSALIWAGATPRFVEIDPTTTNIDLDAVRAALTPDVQAIVAVHNFGNPAAIAELEAIAADA
GIPLIFDAAHGFGAQYDGRPVGGFGTAECFSLSPTKLLIAGEGGIVATNNDELAHKIRTGREYGNDGKYGSDWAGLNARM
AEYNAIMGRYSLEQLEQAARQRNQYAALYWAALFATPGIDFQKVRPNDRCSYKDYSITIEASEFGISRDLLSKALAAEGI
DSRAYYDPPVHRHAAYAQFAPTEGSLPKTDWLAQSSLSLPIHSEMEFSTIETVCAAIKRIQLFGEEIIAKQ

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=366, Percent_Identity=33.3333333333333, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI2367285, Length=234, Percent_Identity=29.4871794871795, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41866; Mature: 41735

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLRPAILGGTPLATSPIRLVRPVLPEFATLAADVEQTLISGMVTKGQHLVAFEQAVAA
CCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HLGVAHAIAVSSCTTGLALVYRALGLNGPVIVPSFTFMATVSALIWAGATPRFVEIDPTT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEECCCC
TNIDLDAVRAALTPDVQAIVAVHNFGNPAAIAELEAIAADAGIPLIFDAAHGFGAQYDGR
CCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
PVGGFGTAECFSLSPTKLLIAGEGGIVATNNDELAHKIRTGREYGNDGKYGSDWAGLNAR
CCCCCCCCHHEECCCCEEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
MAEYNAIMGRYSLEQLEQAARQRNQYAALYWAALFATPGIDFQKVRPNDRCSYKDYSITI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEE
EASEFGISRDLLSKALAAEGIDSRAYYDPPVHRHAAYAQFAPTEGSLPKTDWLAQSSLSL
EHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCHHHHHHCCCCC
PIHSEMEFSTIETVCAAIKRIQLFGEEIIAKQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADLRPAILGGTPLATSPIRLVRPVLPEFATLAADVEQTLISGMVTKGQHLVAFEQAVAA
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HLGVAHAIAVSSCTTGLALVYRALGLNGPVIVPSFTFMATVSALIWAGATPRFVEIDPTT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEECCCC
TNIDLDAVRAALTPDVQAIVAVHNFGNPAAIAELEAIAADAGIPLIFDAAHGFGAQYDGR
CCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
PVGGFGTAECFSLSPTKLLIAGEGGIVATNNDELAHKIRTGREYGNDGKYGSDWAGLNAR
CCCCCCCCHHEECCCCEEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
MAEYNAIMGRYSLEQLEQAARQRNQYAALYWAALFATPGIDFQKVRPNDRCSYKDYSITI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEE
EASEFGISRDLLSKALAAEGIDSRAYYDPPVHRHAAYAQFAPTEGSLPKTDWLAQSSLSL
EHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCHHHHHHCCCCC
PIHSEMEFSTIETVCAAIKRIQLFGEEIIAKQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]