Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900768

Identifier: 159900768

GI number: 159900768

Start: 5428995

End: 5429657

Strand: Direct

Name: 159900768

Synonym: Haur_4255

Alternate gene names: NA

Gene position: 5428995-5429657 (Clockwise)

Preceding gene: 159900757

Following gene: 159900769

Centisome position: 85.54

GC content: 48.87

Gene sequence:

>663_bases
ATGCGTTTTTGGCCGTTATGGCTTATGCTTTTGATCATCAGTTTGGTTGGCTGCGGAGCCACTGCGCCAGCATTACCACC
GATCGCTGCCAACCAGCCCAACCAAATTTTGTTGCTCAACGAGCTAGATGGAGTGGGAGCCAATAGCACTATCACCGTGC
TAGCACCCACAATTTTCAGCCAACCCAGACATTTGTTGGCCGCCGCGATCGAGCTTGGCGATCAACCGAATGCTTACCAA
CCAACCCTGAGTATTCCAGCTCAAACGCTTACAATAACCAATAGCTATGGAATTTTGCGGGTGAATGGTGTGCTTAAAAG
TAGTGCTGAATTCGAGCCAATCAGCGTCAAAGTGGTTGAACCAACCAGCATCAGCCTTGGCGAGCTTAACCAAAACTTGG
CAGTTTACAATAATCAAGTCGTGCGGCTCAATGGCACACTCCTGCTCAAAGATCAAGCAGCTTTATTAGTTGAAGAAGTT
GGTAGCGGCGGTGTGCCCACTGCTAATGCCGCCCAAATCACCGTCGAGCAAATTCCCAGCCAATCGCCGATTATTCAGCA
ATTGCCCAACCAGCAAGGCAATATTCGTTATGGTCAACTGACGATTATTGGGATGTTGCGTGGGAAAACGTTATACGTAT
TTTGGCTTGAAGCGCAGCCCTGA

Upstream 100 bases:

>100_bases
CGCCAAAAGTCTATAGCCCGATCCTTCGTGTTCTGCGAGGATCACTCACTATATAAATGGTACAATCGGCAGCAGTTTAT
AGGCTTGTTTGGAGAATTGC

Downstream 100 bases:

>100_bases
GCCAAAAATTTAATATGTGCAATTTTAGCCCGTTTGCAGGCCAGCAAAACGGGCTTTTTTTAATGGGCTGAATGTGCTAC
GCTCGATGTTAAAAACTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRFWPLWLMLLIISLVGCGATAPALPPIAANQPNQILLLNELDGVGANSTITVLAPTIFSQPRHLLAAAIELGDQPNAYQ
PTLSIPAQTLTITNSYGILRVNGVLKSSAEFEPISVKVVEPTSISLGELNQNLAVYNNQVVRLNGTLLLKDQAALLVEEV
GSGGVPTANAAQITVEQIPSQSPIIQQLPNQQGNIRYGQLTIIGMLRGKTLYVFWLEAQP

Sequences:

>Translated_220_residues
MRFWPLWLMLLIISLVGCGATAPALPPIAANQPNQILLLNELDGVGANSTITVLAPTIFSQPRHLLAAAIELGDQPNAYQ
PTLSIPAQTLTITNSYGILRVNGVLKSSAEFEPISVKVVEPTSISLGELNQNLAVYNNQVVRLNGTLLLKDQAALLVEEV
GSGGVPTANAAQITVEQIPSQSPIIQQLPNQQGNIRYGQLTIIGMLRGKTLYVFWLEAQP
>Mature_220_residues
MRFWPLWLMLLIISLVGCGATAPALPPIAANQPNQILLLNELDGVGANSTITVLAPTIFSQPRHLLAAAIELGDQPNAYQ
PTLSIPAQTLTITNSYGILRVNGVLKSSAEFEPISVKVVEPTSISLGELNQNLAVYNNQVVRLNGTLLLKDQAALLVEEV
GSGGVPTANAAQITVEQIPSQSPIIQQLPNQQGNIRYGQLTIIGMLRGKTLYVFWLEAQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23610; Mature: 23610

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFWPLWLMLLIISLVGCGATAPALPPIAANQPNQILLLNELDGVGANSTITVLAPTIFS
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECHHHC
QPRHLLAAAIELGDQPNAYQPTLSIPAQTLTITNSYGILRVNGVLKSSAEFEPISVKVVE
CCHHHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCEEEECCEECCCCCCCCEEEEEEC
PTSISLGELNQNLAVYNNQVVRLNGTLLLKDQAALLVEEVGSGGVPTANAAQITVEQIPS
CCCCCHHHCCCCEEEECCEEEEECCEEEEECCHHHHHHHHCCCCCCCCCCEEEEHHHCCC
QSPIIQQLPNQQGNIRYGQLTIIGMLRGKTLYVFWLEAQP
CCCHHHHCCCCCCCEEEEEEEEEEEECCCEEEEEEEECCC
>Mature Secondary Structure
MRFWPLWLMLLIISLVGCGATAPALPPIAANQPNQILLLNELDGVGANSTITVLAPTIFS
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECHHHC
QPRHLLAAAIELGDQPNAYQPTLSIPAQTLTITNSYGILRVNGVLKSSAEFEPISVKVVE
CCHHHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCEEEECCEECCCCCCCCEEEEEEC
PTSISLGELNQNLAVYNNQVVRLNGTLLLKDQAALLVEEVGSGGVPTANAAQITVEQIPS
CCCCCHHHCCCCEEEECCEEEEECCEEEEECCHHHHHHHHCCCCCCCCCCEEEEHHHCCC
QSPIIQQLPNQQGNIRYGQLTIIGMLRGKTLYVFWLEAQP
CCCHHHHCCCCCCCEEEEEEEEEEEECCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA