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The map label for this gene is rpoE [H]

Identifier: 159900756

GI number: 159900756

Start: 5411525

End: 5412052

Strand: Direct

Name: rpoE [H]

Synonym: Haur_4243

Alternate gene names: 159900756

Gene position: 5411525-5412052 (Clockwise)

Preceding gene: 159900755

Following gene: 159900757

Centisome position: 85.27

GC content: 48.11

Gene sequence:

>528_bases
ATGAATTCATCTGTTATGACAGAATTTCAGCAATTGCACAGCGAAACACTCGAATCATTGCATAGTCGCTATCATACAAT
GGTACTCCGAACTGCCTACTTGATACTGGCAGATTGGGGCCATGCTGAAGATGTCGCCCAAGAAGTTTGGATGCGAGTTA
ATCGGGCGTTGGTGCGCTTTGACCCTGACCGAGGAGCATGGTCAACATGGTTGCATCACATCACGGTTAATTGCTGTTTA
AGCACCCGCAAACGACTAAGCCGCTGGCTCGGCGAACAATTGCGGCCTGAGACAGAACAGCCTCAAGCCACGACCCTTGA
TAATTTGTTGCGCAGTGAGGAGGAGCAAGTTATCTGGAACGCTATTGGTAATTTATCGTTGAAATTGCGCAGCGTCATCG
TCTTGCGCTACTTTCACGACCTAAGCTACGAACAAATTGCAGCTATTTTAGAATGCCCAATTGGTACAGTGCGGTCGCGT
TTACACACTGCCCATGCACAACTACGCAACCACTTGGAGGATGTATGA

Upstream 100 bases:

>100_bases
GCAAAATTATCGAGGTTTTCTATTTAATCCCATTTAAAACTGAACTTTTTAACGTTACCCTCAGTTTAGTTCAGCAAGCA
TGCATGAGGGAAAGCTTCCG

Downstream 100 bases:

>100_bases
ACCACGATCTAGCGGCAGTGCTTGATTATCTTGATCAGCGTTTTGGCTCGTCTGATCGACAAGCTTTTGAAGAACGCTTA
GCCCAAGAACCACAATTACG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNSSVMTEFQQLHSETLESLHSRYHTMVLRTAYLILADWGHAEDVAQEVWMRVNRALVRFDPDRGAWSTWLHHITVNCCL
STRKRLSRWLGEQLRPETEQPQATTLDNLLRSEEEQVIWNAIGNLSLKLRSVIVLRYFHDLSYEQIAAILECPIGTVRSR
LHTAHAQLRNHLEDV

Sequences:

>Translated_175_residues
MNSSVMTEFQQLHSETLESLHSRYHTMVLRTAYLILADWGHAEDVAQEVWMRVNRALVRFDPDRGAWSTWLHHITVNCCL
STRKRLSRWLGEQLRPETEQPQATTLDNLLRSEEEQVIWNAIGNLSLKLRSVIVLRYFHDLSYEQIAAILECPIGTVRSR
LHTAHAQLRNHLEDV
>Mature_175_residues
MNSSVMTEFQQLHSETLESLHSRYHTMVLRTAYLILADWGHAEDVAQEVWMRVNRALVRFDPDRGAWSTWLHHITVNCCL
STRKRLSRWLGEQLRPETEQPQATTLDNLLRSEEEQVIWNAIGNLSLKLRSVIVLRYFHDLSYEQIAAILECPIGTVRSR
LHTAHAQLRNHLEDV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20439; Mature: 20439

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSVMTEFQQLHSETLESLHSRYHTMVLRTAYLILADWGHAEDVAQEVWMRVNRALVRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
DPDRGAWSTWLHHITVNCCLSTRKRLSRWLGEQLRPETEQPQATTLDNLLRSEEEQVIWN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AIGNLSLKLRSVIVLRYFHDLSYEQIAAILECPIGTVRSRLHTAHAQLRNHLEDV
HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSSVMTEFQQLHSETLESLHSRYHTMVLRTAYLILADWGHAEDVAQEVWMRVNRALVRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
DPDRGAWSTWLHHITVNCCLSTRKRLSRWLGEQLRPETEQPQATTLDNLLRSEEEQVIWN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AIGNLSLKLRSVIVLRYFHDLSYEQIAAILECPIGTVRSRLHTAHAQLRNHLEDV
HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]