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The map label for this gene is ydgJ [H]

Identifier: 159900561

GI number: 159900561

Start: 5166053

End: 5167093

Strand: Reverse

Name: ydgJ [H]

Synonym: Haur_4048

Alternate gene names: 159900561

Gene position: 5167093-5166053 (Counterclockwise)

Preceding gene: 159900562

Following gene: 159900552

Centisome position: 81.42

GC content: 50.91

Gene sequence:

>1041_bases
ATGCCAATTAATCTGGCTTTGGTGGGTTTTGGGATGGCCAGTCAAGTGTTTCATGCTCCACTGATTATGGCCGAACCACA
ATTAACCTTACATACGATTGTTCAACGCAGTAGCCAAAGCGCCCGCGAAACGTATCCCCATGTGCAGATTGTCAGCGATC
TGGCTGAAGCGCTCGCGAACCCAGCGATAGAGTTGGTAGTGATTGCCACACCCAACCAAACCCACGCCGATTTGGCAGCC
CAAGCCTTGCGGGCAGGCAAACATGTGGTGGTCGATAAGCCGTTTACGCTCAATAGTCAACAGGCTGATCAATTAATTGC
CCTAGCCCAAGAGCAACAACGTGTGTTAAGCGTCTTTCACAATCGACGTTGGGACGGCGATTTTTTGACTGCTCAAGCTG
TGATTCAGGCTGGCTGGTTGGGGCGTTTAGTCAGCTACGAATGCCATTACGATCGCTATCGACCGCAACTAAAACAAGCG
GCTTGGCGTGAACAAGCTGGCCTTGGCAGCGGGATTTTGTACGATCTCGGCGCACATTTGATTGATCAAGCCTTGGTGTT
ATTTGGCATGCCCCAATCGATCACAGCTCAGCTTGCCAAGCAACGTGAGGGTGCGCAAACGGTCGATTATTTTGATTTGT
GTTTGGGTTATGCTGAGTTGCAAGTCACGCTCAAAGCAGGTATGTTGGTGCGCGAATTGGGGCCGCGCTTCAGTCTCCAT
GGCACAAACGGCTCATGGATCAAATATGGCATTGATCCCCAAGAAGCGGCCTTGAAAGCAGGCCAAGCGCCAAACAGCCC
AAATTGGGGCCAAGAACCTGCAACTGATTGGGGTATGATCAACACGGAGCTGAATGGTTTAGCGTTGCGTGGCACAGTCG
AAACCATCGCTGGCAAGTATCCGGCCTATTATTGCAATGTAGCACAAGCCATTCAAGGTAAGGCTGAGATCATCGTTCAG
GCCAACCAAGCTCGAAGCGTGATTCGGCTGATTGAGTTGGCCGAGCAAAGTGCAGCTGAACAACGCACAATGACAATTTA
A

Upstream 100 bases:

>100_bases
CCAAACGACGTAAAATTCATGTTGAGTTTGAATTACCGCAACGCGAAGCCTATAGCAATTTGCTCGCAAGCCACTTTGAT
CGTTAATCTTGGAGGTATCG

Downstream 100 bases:

>100_bases
GCAACTCAACTCCTTTACCCACCCAGCAGGTAAGGGAATGTTGAAAAGAGTAGATTAGATTTCTGCTGCGAACCACCAAA
TCTCTGGTTCATCAGTAGAT

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MPINLALVGFGMASQVFHAPLIMAEPQLTLHTIVQRSSQSARETYPHVQIVSDLAEALANPAIELVVIATPNQTHADLAA
QALRAGKHVVVDKPFTLNSQQADQLIALAQEQQRVLSVFHNRRWDGDFLTAQAVIQAGWLGRLVSYECHYDRYRPQLKQA
AWREQAGLGSGILYDLGAHLIDQALVLFGMPQSITAQLAKQREGAQTVDYFDLCLGYAELQVTLKAGMLVRELGPRFSLH
GTNGSWIKYGIDPQEAALKAGQAPNSPNWGQEPATDWGMINTELNGLALRGTVETIAGKYPAYYCNVAQAIQGKAEIIVQ
ANQARSVIRLIELAEQSAAEQRTMTI

Sequences:

>Translated_346_residues
MPINLALVGFGMASQVFHAPLIMAEPQLTLHTIVQRSSQSARETYPHVQIVSDLAEALANPAIELVVIATPNQTHADLAA
QALRAGKHVVVDKPFTLNSQQADQLIALAQEQQRVLSVFHNRRWDGDFLTAQAVIQAGWLGRLVSYECHYDRYRPQLKQA
AWREQAGLGSGILYDLGAHLIDQALVLFGMPQSITAQLAKQREGAQTVDYFDLCLGYAELQVTLKAGMLVRELGPRFSLH
GTNGSWIKYGIDPQEAALKAGQAPNSPNWGQEPATDWGMINTELNGLALRGTVETIAGKYPAYYCNVAQAIQGKAEIIVQ
ANQARSVIRLIELAEQSAAEQRTMTI
>Mature_345_residues
PINLALVGFGMASQVFHAPLIMAEPQLTLHTIVQRSSQSARETYPHVQIVSDLAEALANPAIELVVIATPNQTHADLAAQ
ALRAGKHVVVDKPFTLNSQQADQLIALAQEQQRVLSVFHNRRWDGDFLTAQAVIQAGWLGRLVSYECHYDRYRPQLKQAA
WREQAGLGSGILYDLGAHLIDQALVLFGMPQSITAQLAKQREGAQTVDYFDLCLGYAELQVTLKAGMLVRELGPRFSLHG
TNGSWIKYGIDPQEAALKAGQAPNSPNWGQEPATDWGMINTELNGLALRGTVETIAGKYPAYYCNVAQAIQGKAEIIVQA
NQARSVIRLIELAEQSAAEQRTMTI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=344, Percent_Identity=45.3488372093023, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1789848, Length=344, Percent_Identity=33.7209302325581, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787574, Length=210, Percent_Identity=24.2857142857143, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323975, Length=287, Percent_Identity=22.6480836236934, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37903; Mature: 37772

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINLALVGFGMASQVFHAPLIMAEPQLTLHTIVQRSSQSARETYPHVQIVSDLAEALAN
CCEEEEEECCCHHHHHHHCCEEEECCCHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCC
PAIELVVIATPNQTHADLAAQALRAGKHVVVDKPFTLNSQQADQLIALAQEQQRVLSVFH
CCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NRRWDGDFLTAQAVIQAGWLGRLVSYECHYDRYRPQLKQAAWREQAGLGSGILYDLGAHL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IDQALVLFGMPQSITAQLAKQREGAQTVDYFDLCLGYAELQVTLKAGMLVRELGPRFSLH
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GTNGSWIKYGIDPQEAALKAGQAPNSPNWGQEPATDWGMINTELNGLALRGTVETIAGKY
CCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECHHHHHHCCC
PAYYCNVAQAIQGKAEIIVQANQARSVIRLIELAEQSAAEQRTMTI
CHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PINLALVGFGMASQVFHAPLIMAEPQLTLHTIVQRSSQSARETYPHVQIVSDLAEALAN
CEEEEEECCCHHHHHHHCCEEEECCCHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCC
PAIELVVIATPNQTHADLAAQALRAGKHVVVDKPFTLNSQQADQLIALAQEQQRVLSVFH
CCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NRRWDGDFLTAQAVIQAGWLGRLVSYECHYDRYRPQLKQAAWREQAGLGSGILYDLGAHL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IDQALVLFGMPQSITAQLAKQREGAQTVDYFDLCLGYAELQVTLKAGMLVRELGPRFSLH
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GTNGSWIKYGIDPQEAALKAGQAPNSPNWGQEPATDWGMINTELNGLALRGTVETIAGKY
CCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECHHHHHHCCC
PAYYCNVAQAIQGKAEIIVQANQARSVIRLIELAEQSAAEQRTMTI
CHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]