| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900528
Identifier: 159900528
GI number: 159900528
Start: 5122023
End: 5122943
Strand: Direct
Name: 159900528
Synonym: Haur_4015
Alternate gene names: NA
Gene position: 5122023-5122943 (Clockwise)
Preceding gene: 159900527
Following gene: 159900529
Centisome position: 80.71
GC content: 50.6
Gene sequence:
>921_bases ATGAGCGACCGTACTCCCCCAACCGAAGTTCTCGAATTTGAAAACGATCTTGAGCCAGATCCTGAACCGGAAGAGGTGCC TTCAGCAATTATTCAAGAGGATGAAGCGATCGCGCCACAAGGCATGACTTTTCAAGCGTTAGTATTTGGCGTAGCCATTA TTCTGATTATCTTTTTGGTACTGCTGTTGGCGAGTGGCAATAATATCAATCTCTTTAATCTTTTTGGGAGCGATAGCAAT GCCCAGCCAACCTTGCAACCTTTACTCAATAGCGTTCAAACCCAATCCAATCGCTCGCTCGATGTTGAAGCGGCGGTGCT GGAAGGCCAACGCTTTTATGGTGTTGATGGATTAAACGCCCTGCCAAGTTATGCTGCTGAGATCGACCCGCTGTTTTTGC CCTATTGGGTCAAGAATGGCGGCGAACGGATCTTTGGACGACCGATCAGTGGCTTGCTTGAAGAAAATGGCCGCCAATTT CAATGGTTTGAGCGGGCACGGCTTGAATGGTGGCCTGAGCATCAAGCAACGAAATACGAAGTGCAGCCAGGCCGAGTTGG GGTTGAATTCACCCAAAACCGCGATTTTCCTAACCAGCAATTTTTTGCCAATCGCCCAGGGCTGCGTTATAGCGAAGCGA CCCAACAAGGGTTGCGCGGGGCATTCCTTGAATTTTGGGAAGCCAACGGCGGCATCGATCTGCTGGGCTGGCCAATTAGC GAGGAGTTGCAAGAGGTGCTGCCTGAAGATCGCACAGTGCATACCGTGCAATATTTCGAGCGTGGTCGGCTTGAGCTACA CCCCAACGATCCCAATCAAATGGTCAAAATTGGCTTATTAGGCCGCGCCCTCTACTTCCAAGATAGTCAGCCAAACTACA TTGAGCCAGTTGCCCCCACCGCAGTTCCGGTCATTCCTTAG
Upstream 100 bases:
>100_bases GGAGTATTCTCATTTTGGCGACCAAACCCAACCGATCACGCAGCATTTGCCGCTTTAGCCGAGCGTTTGCGGGCTAACAA TCAAGCATGAGGAACTGCCC
Downstream 100 bases:
>100_bases CCCTGAGAAACCTATGAAACCTGAAACCCTGTTAATTCATGCTGGTCGTAGCGTCGATGCTGCGACCAGTGCAGTTACGC CGCCGATTCATCTTGCCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase S8/S53 Subtilisin Kexin Sedolisin; Sortase Family Protein; Peptidase; VanW Family Protein; N-Acetylmuramoyl-L-Alanine Amidase Domain Protein; ErfK/YbiS/YcfS/YnhG Family; Spore Peptidoglycan Hydrolase; Excalibur Domain Protein; SCP-Like Extracellular; Peptidase S8 And; 5-Nucleotidase Domain-Containing Protein; Beta-Lactamase; Glycoside Hydrolase Family; Polysaccharide Deacetylase; Ig Domain Domain Protein; NLP/P60 Protein
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MSDRTPPTEVLEFENDLEPDPEPEEVPSAIIQEDEAIAPQGMTFQALVFGVAIILIIFLVLLLASGNNINLFNLFGSDSN AQPTLQPLLNSVQTQSNRSLDVEAAVLEGQRFYGVDGLNALPSYAAEIDPLFLPYWVKNGGERIFGRPISGLLEENGRQF QWFERARLEWWPEHQATKYEVQPGRVGVEFTQNRDFPNQQFFANRPGLRYSEATQQGLRGAFLEFWEANGGIDLLGWPIS EELQEVLPEDRTVHTVQYFERGRLELHPNDPNQMVKIGLLGRALYFQDSQPNYIEPVAPTAVPVIP
Sequences:
>Translated_306_residues MSDRTPPTEVLEFENDLEPDPEPEEVPSAIIQEDEAIAPQGMTFQALVFGVAIILIIFLVLLLASGNNINLFNLFGSDSN AQPTLQPLLNSVQTQSNRSLDVEAAVLEGQRFYGVDGLNALPSYAAEIDPLFLPYWVKNGGERIFGRPISGLLEENGRQF QWFERARLEWWPEHQATKYEVQPGRVGVEFTQNRDFPNQQFFANRPGLRYSEATQQGLRGAFLEFWEANGGIDLLGWPIS EELQEVLPEDRTVHTVQYFERGRLELHPNDPNQMVKIGLLGRALYFQDSQPNYIEPVAPTAVPVIP >Mature_305_residues SDRTPPTEVLEFENDLEPDPEPEEVPSAIIQEDEAIAPQGMTFQALVFGVAIILIIFLVLLLASGNNINLFNLFGSDSNA QPTLQPLLNSVQTQSNRSLDVEAAVLEGQRFYGVDGLNALPSYAAEIDPLFLPYWVKNGGERIFGRPISGLLEENGRQFQ WFERARLEWWPEHQATKYEVQPGRVGVEFTQNRDFPNQQFFANRPGLRYSEATQQGLRGAFLEFWEANGGIDLLGWPISE ELQEVLPEDRTVHTVQYFERGRLELHPNDPNQMVKIGLLGRALYFQDSQPNYIEPVAPTAVPVIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34539; Mature: 34408
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRTPPTEVLEFENDLEPDPEPEEVPSAIIQEDEAIAPQGMTFQALVFGVAIILIIFLV CCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LLLASGNNINLFNLFGSDSNAQPTLQPLLNSVQTQSNRSLDVEAAVLEGQRFYGVDGLNA HHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEECCCCCCH LPSYAAEIDPLFLPYWVKNGGERIFGRPISGLLEENGRQFQWFERARLEWWPEHQATKYE HHHHHHHCCCEEEEHHHCCCCCEECCCCHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEE VQPGRVGVEFTQNRDFPNQQFFANRPGLRYSEATQQGLRGAFLEFWEANGGIDLLGWPIS ECCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH EELQEVLPEDRTVHTVQYFERGRLELHPNDPNQMVKIGLLGRALYFQDSQPNYIEPVAPT HHHHHHCCCCCEEHHHHHHHCCCEEECCCCCHHEEEEEEEEEEEEEECCCCCCCCCCCCC AVPVIP CCCCCC >Mature Secondary Structure SDRTPPTEVLEFENDLEPDPEPEEVPSAIIQEDEAIAPQGMTFQALVFGVAIILIIFLV CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LLLASGNNINLFNLFGSDSNAQPTLQPLLNSVQTQSNRSLDVEAAVLEGQRFYGVDGLNA HHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEECCCCCCH LPSYAAEIDPLFLPYWVKNGGERIFGRPISGLLEENGRQFQWFERARLEWWPEHQATKYE HHHHHHHCCCEEEEHHHCCCCCEECCCCHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEE VQPGRVGVEFTQNRDFPNQQFFANRPGLRYSEATQQGLRGAFLEFWEANGGIDLLGWPIS ECCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH EELQEVLPEDRTVHTVQYFERGRLELHPNDPNQMVKIGLLGRALYFQDSQPNYIEPVAPT HHHHHHCCCCCEEHHHHHHHCCCEEECCCCCHHEEEEEEEEEEEEEECCCCCCCCCCCCC AVPVIP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA