| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900502
Identifier: 159900502
GI number: 159900502
Start: 5088272
End: 5088988
Strand: Direct
Name: 159900502
Synonym: Haur_3989
Alternate gene names: NA
Gene position: 5088272-5088988 (Clockwise)
Preceding gene: 159900501
Following gene: 159900503
Centisome position: 80.17
GC content: 50.63
Gene sequence:
>717_bases ATGGCACACACCGACTACTCTGTTGATATCGTAATTCCGGTATTGAATGAAGAGCAGCAGCTAGAGCAAAGCGTCGTAGC CCTTCGCGATTTTTTGCAGGCCTCGTGTCCTTATCGTTGGCGCATCGTTGTCGCCGATAATGGCTCAACCGACCGCACGC CCCAAATTTGCCACGATCTGCGCAGTCGTTTTCCAGGCGAGGTCGATTTTGAGCGCTTGGAGCAACGTGGGCGAGGGCGG GCGTTGCGCACTGCTTGGCTCAAAAGTTCAGCCGATATTTTGTGTTATATGGATGTCGATCTTTCGACCAATCTCCGTGC GTTGCCACCATTGCTCGCCGCATTAATTCACAGCGATTATAGCCTGGGCACTGGCTCACGCTTGATGCACGGGGCAATTG TTACGCGCCAATGGAAGCGCGAAATGATTTCCCGCGCCTACAATTTGTTGATTCGCGTGCTATTTTGGCATCGTTTTCGC GATGCTCAATGTGGCTTCAAAGCAATTACCCGTCAAGCGGCCCAAGAACTCATCCCAATGGTGCGCGATAACGAATGGTT TTTTGATACTGAATTATTGCTCAAAGCTGAACGGCGCGGTTATCGTATTTTTGAAGTGCCCGTTGAATGGATCGAAGACT TGGGCACAACGGTCAAAATTGTTAAAACCGCTTGGCAAGATATTAAAGGCTTGGTACGGGTTCGCTTGGGCGGCTAA
Upstream 100 bases:
>100_bases GGCTGCGAAGGCGTGTAGCTCAATAGCAATTTTTTGCCCATTTTCGCTCATGCCCTAGGTCGGATCGTCGGCTTAGGGTT TGTTGTTTCTCCGAGGTTGT
Downstream 100 bases:
>100_bases ATCATTCATTAGCCCTAGGTCGCTGTGTGGTAGCGCCGCCAGCCAATCGGGGCTACAATAGACAATACGCTATTGCTGGC AGGAGCAAAGATCCTATGAC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyl Transferase; Dolichyl-Phosphate Beta-Glucosyltransferase; Glycosyltransferase; Glycosyl Transferase Family 2 Protein; Dolichol-P-Glucose Synthetase; Dolichol-Phosphate Mannosyltransferase; GtrA Family Protein; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Dolichol-Phosphate Mannose Synthase; Family 2 Glycosyltransferase; Dolichyl-Phosphate Mannose Synthase Related Protein; Group 2 Family Glycosyl Transferase; Family 2 Glycosyl Transferase; Glycosyl Transferase GT2 Family Protein; Glycosyltransferase AglD; Glycolsyltransferase; Gtra-Like Glycosyl Transferase; Polyprenol-Phosphate Mannosyltransferase; Family Glycosyltransferase; Family 2 Glycosyl Transferase Protein; Glycosyltransferase D; Cell Wall Biosynthesis Glycosyltransferase-Like Protein; Polyprenol-Phosphate Glycosyltransferase; Two-Component System Response Regulator; Polysaccharide Biosynthesis Protein; Glycosyl Transferase Group 2 Family; Glycosyltransferase Involved In Cell Wall Biogenesis; Cell Wall Biogenesis Glycosyltransferase-Like Protein; Cell Wall Biosynthesis Glycosyltransferase; Glycosyl Transferase Group 2 Family Protein; Glucosyltransferase
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MAHTDYSVDIVIPVLNEEQQLEQSVVALRDFLQASCPYRWRIVVADNGSTDRTPQICHDLRSRFPGEVDFERLEQRGRGR ALRTAWLKSSADILCYMDVDLSTNLRALPPLLAALIHSDYSLGTGSRLMHGAIVTRQWKREMISRAYNLLIRVLFWHRFR DAQCGFKAITRQAAQELIPMVRDNEWFFDTELLLKAERRGYRIFEVPVEWIEDLGTTVKIVKTAWQDIKGLVRVRLGG
Sequences:
>Translated_238_residues MAHTDYSVDIVIPVLNEEQQLEQSVVALRDFLQASCPYRWRIVVADNGSTDRTPQICHDLRSRFPGEVDFERLEQRGRGR ALRTAWLKSSADILCYMDVDLSTNLRALPPLLAALIHSDYSLGTGSRLMHGAIVTRQWKREMISRAYNLLIRVLFWHRFR DAQCGFKAITRQAAQELIPMVRDNEWFFDTELLLKAERRGYRIFEVPVEWIEDLGTTVKIVKTAWQDIKGLVRVRLGG >Mature_237_residues AHTDYSVDIVIPVLNEEQQLEQSVVALRDFLQASCPYRWRIVVADNGSTDRTPQICHDLRSRFPGEVDFERLEQRGRGRA LRTAWLKSSADILCYMDVDLSTNLRALPPLLAALIHSDYSLGTGSRLMHGAIVTRQWKREMISRAYNLLIRVLFWHRFRD AQCGFKAITRQAAQELIPMVRDNEWFFDTELLLKAERRGYRIFEVPVEWIEDLGTTVKIVKTAWQDIKGLVRVRLGG
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7019323, Length=242, Percent_Identity=25.6198347107438, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI4503363, Length=214, Percent_Identity=23.3644859813084, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI25146207, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71999402, Length=206, Percent_Identity=24.2718446601942, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6325029, Length=250, Percent_Identity=26, Blast_Score=98, Evalue=1e-21, Organism=Drosophila melanogaster, GI24582769, Length=224, Percent_Identity=29.9107142857143, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24585265, Length=228, Percent_Identity=26.3157894736842, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27560; Mature: 27429
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHTDYSVDIVIPVLNEEQQLEQSVVALRDFLQASCPYRWRIVVADNGSTDRTPQICHDL CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH RSRFPGEVDFERLEQRGRGRALRTAWLKSSADILCYMDVDLSTNLRALPPLLAALIHSDY HHHCCCCCCHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC SLGTGSRLMHGAIVTRQWKREMISRAYNLLIRVLFWHRFRDAQCGFKAITRQAAQELIPM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VRDNEWFFDTELLLKAERRGYRIFEVPVEWIEDLGTTVKIVKTAWQDIKGLVRVRLGG HCCCCEEEHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHEEECC >Mature Secondary Structure AHTDYSVDIVIPVLNEEQQLEQSVVALRDFLQASCPYRWRIVVADNGSTDRTPQICHDL CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH RSRFPGEVDFERLEQRGRGRALRTAWLKSSADILCYMDVDLSTNLRALPPLLAALIHSDY HHHCCCCCCHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC SLGTGSRLMHGAIVTRQWKREMISRAYNLLIRVLFWHRFRDAQCGFKAITRQAAQELIPM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VRDNEWFFDTELLLKAERRGYRIFEVPVEWIEDLGTTVKIVKTAWQDIKGLVRVRLGG HCCCCEEEHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA