Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 159900130

GI number: 159900130

Start: 4541841

End: 4544000

Strand: Direct

Name: yrrC [H]

Synonym: Haur_3613

Alternate gene names: 159900130

Gene position: 4541841-4544000 (Clockwise)

Preceding gene: 159900129

Following gene: 159900131

Centisome position: 71.56

GC content: 52.41

Gene sequence:

>2160_bases
ATGGATCAACTAACAGGCAACCTAGAACGCATCACCTATCGCTCGGATGAAACGGGCTATACCGTGGCGCGTTTGAAAGC
CCAAGGCCAGCGCAGCGTGATCACAATTGTTGGGCGTTTGCCCGATGTGCAAGTTGGCGAACAGTTGCAACTTGAAGGCC
AATGGATCGAGCATCGAACCCATGGCCGCCAATTTGAAGTTGCTAGCTATCAAACTGCCCGGCCAACTGGCAACGAAAGT
ATTGTGCGCTACTTGGCATCGGGCTTATTGCCAGGCATTGGTCCAGTCAATGCCCAACGCATCGCTGATACCTTTGGTGA
AGCCACGCTCGATGTACTTGATACTATGCCCGAACGCTTACGCGAAGTAAAAGGCTTAGGCACGAAGAAAATTGCCGCAA
TTATCGTAGCCTGGCAAGAACAACGTGCAATCAAAGCCTTGCTCGAATTGGGCCAAGCCGTTGGGTTAACGACAGGTTTA
GCCTTACGCATTTTTCGGCACTATGGCGAGCAGGCTAGCCAGATTGTGCAACACGACCCTTATCGTCTAGCCTTAGAAAT
TGAAGGCATTGGCTTTCCGACTGCCGACCACATTGCCCAAGCTTTGGGCGTAGCGCGAGATGCTCCCAGTCGGGTGATTG
CTGGATTGCGCTATACCCTCAGCATGGTTGCCAACACCGAAGGCCATTGCGCTCTGCCCCAAATCGAGTTAATCGCGCAA
ACTCAAACCATCCTAGAATTACCCCATGAGCTGATTGCCGAACAATTGGCGGTGGCAACCGAATCAGTGTTATTGGTGCT
TGATGGCGATCTAGTCTATTTACCAGCCTATTATCATGCTGAAACCGAGTTAGCACATAACTTGCAGCGCTTGCAACAGC
TCCCCAGTGCAATCCAATTGCGCTTCAAGCAGCAAAGCGATGCGATTATTATGCGCCAATTGCATAATGCGAGCTTCGAT
TTGAGCCAACGCCAAGCCGAAGCCGTGCTGGCCGTGCTCCGCTCCAAAGTGGTGTTGCTAACTGGCGGGCCTGGCACAGG
CAAAACCACCACAGTCCGCGCAATTTTGGCCTTGCTCCAACAAGTTGGGTTACGCACAATTTTGGCGGCTCCAACCGGAC
GCGCCGCCCGTCGTCTCGCCGAAACCACCAATCATCCAGCTGCCACAATTCATCGCACCCTCGAATATAGCGGCGGCGCT
GGCAATGACCGCTGGGGCCGCAACGAACATGCCCAACTAGTTGCCGATTTAGTGGTCATCGACGAAACCTCAATGCTCGA
CATTGTGCTGGCCCATCATATGGTCAAGGCCTTGGCTCCAACCACCCATTTGCTCTTGGTTGGCGATCCTGATCAGTTGC
CAGCAGTTGGGCCAGGCGCTGTATTGCGCGATTTGTTGGCTAGCAACCGCATCACAACCGTCCATTTGGATACGATTTTT
CGCCAAGCCGCTGATAGCCAAATTATCACCAATGCCCATGCAATCAATCAAGGCCAGTTACCCAGCGTCAATCAAGGTGA
TTTCTATTGGTTTCCGCGCAGTAACCCAGCCGAATGCGGTGCGATGATTGTGGATTTGTTGACTACCCGTATTCCACGCC
AATTCCCGCAATTTGATCCTCTGCGCGATATTCAGGTGTTGGCAGCAACCCATCGGGGCGCGGCAGGCGTGCTCGAATTA
AACAGCCAACTGCAAGCAGCACTCAACCCGCCAAACACCACTCGCCAAGAAGCCACGATTGCTGGCACGCTCTTTCGCGA
AGGTGATCGGGTTATTCAAACCCGTAACAATTATGATCTCGATGTCAGCAATGGCGATTTAGGCCTGATTCAAACGATTG
ATCTCGAAGAACGCACGGTTAGCGTTTATTTTGACGATACTCGCAACGTCGTCTATCAGTGGAATGAGTTTGATGAAGTG
GCCTTGGCGTATGCAATTAGCGTACATAAAGCCCAAGGCTCAGAATATCCGGTGGTGATTGTGCCAATGTTGCGTTATTA
CAATGTGCTGCTCAACCGACCGTTGCTGTATACCGCCATCACTCGCGCTCGTCAATTGGTGATTCTGACTGGCGATTGGC
AGGCCGTCGAATTTGCGATTGCCCAACGCCGCAGTGGGCAGCGCATCACGGGGTTAAGCCAACGCTTTGGGATGCATTGA

Upstream 100 bases:

>100_bases
ACCTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGAT
TTCTGACTTTTGACGTAACT

Downstream 100 bases:

>100_bases
TGGATGTCTCGCAGGATCAAGCGCTGCGCTGTGGAAGTGTCAAACATCCTACACTTAAATATTAGCCTTTTATGCTACTC
TATGCACAGCATATTGTGAG

Product: RecD/TraA family helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 719; Mature: 719

Protein sequence:

>719_residues
MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES
IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL
ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ
TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD
LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA
GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF
RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL
NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV
ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH

Sequences:

>Translated_719_residues
MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES
IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL
ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ
TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD
LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA
GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF
RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL
NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV
ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH
>Mature_719_residues
MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES
IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL
ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ
TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD
LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA
GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF
RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL
NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV
ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=538, Percent_Identity=27.8810408921933, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 79223; Mature: 79223

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRT
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHHC
HGRQFEVASYQTARPTGNESIVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERL
CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
REVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGLALRIFRHYGEQASQIVQHDP
HHHHCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
YRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ
EEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQL
HHHHHHCHHHHHHHHHHHHHCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHCHHHHHH
RFKQQSDAIIMRQLHNASFDLSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQ
HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH
QVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGAGNDRWGRNEHAQLVADLVVI
HCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHEE
DETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH
RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDP
HHHCCCHHEECHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LRDIQVLAATHRGAAGVLELNSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDL
CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEE
DVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEVALAYAISVHKAQGSEYPVVI
EECCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE
VPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH
EEHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRT
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHHC
HGRQFEVASYQTARPTGNESIVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERL
CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
REVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGLALRIFRHYGEQASQIVQHDP
HHHHCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
YRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ
EEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQL
HHHHHHCHHHHHHHHHHHHHCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHCHHHHHH
RFKQQSDAIIMRQLHNASFDLSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQ
HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH
QVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGAGNDRWGRNEHAQLVADLVVI
HCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHEE
DETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH
RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDP
HHHCCCHHEECHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LRDIQVLAATHRGAAGVLELNSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDL
CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEE
DVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEVALAYAISVHKAQGSEYPVVI
EECCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE
VPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH
EEHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]