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The map label for this gene is ykuT [H]

Identifier: 159899893

GI number: 159899893

Start: 4255392

End: 4256207

Strand: Reverse

Name: ykuT [H]

Synonym: Haur_3376

Alternate gene names: 159899893

Gene position: 4256207-4255392 (Counterclockwise)

Preceding gene: 159899894

Following gene: 159899890

Centisome position: 67.06

GC content: 49.02

Gene sequence:

>816_bases
ATGTTCGATTGGATTCAACCTTACTTACCACCTACAAATAGCGCTTCTTACTATATTCTGCGAGGTACACTGACGTTTTT
GGTAGTGGCTGTCGCCGCCCGCGCGATTAGCATCATCATTCGACGAGCTTTTCTCTCGAATGCCCAATTGCTCCGCCATA
ACCTCAGCGAACGCCGCCGTAAGACCTTACGCTCCTTGGTTTCGTCACTGACCAATGGCTTGGCGATTTTGATCTCGCTG
TTTTTGATTATGGGCATGTTTATTCAGCCCAGTGCCTTATTTACCTTTTTGGGCTTGTTTAGTGCGGGCTTGGGGTTTAG
TGCGCGGCCTTATGTTAGCGATTTTCTGGGCGGAATTACGCTGCTGTTTGAAGATCAATTTGCCTTGGGCGATAAAGTTG
AGATTGGCGATCGCCAAGTGGTGGGGTGTGTTGAGCGCATTAGCTTGCGCATGACCTATATTCGCGGTGAATCGGGTGAG
CTTTGGCTGGTGCCTAATGGCGATATTCGCACCATTCGCAATTTTACCCGTGGCAAATGGTCGCCAGCCAGCATCAAATT
GACCGTGCCAACCACCAAACTTGATGAAACCATGATCGTGCTACACCAAATTATCAGCGATCCAGGTGATGATGTGATTG
AAACGCCCGAAATCATCAGCGAAGATGGCGAAATTGGTGCAGTCACGACCACGATTACATTAAAAGTTAAGGCGCGTTAC
AGTATGGCTCCGGCTGTGCGTGAGCGTTTGATCACTCAACTTCAAGCGGCGTTAACTGAGCACCATGTGTTGGCTGCGGA
TGAAAATCGGGAATAG

Upstream 100 bases:

>100_bases
TATTTTGCCTTTTGCCTTCTGCCTTTTGCCTTTCCTATGCTACTCTGTGGCATGCGAATTGCCGCAGCATTTGGCGAAAA
ACAACTAGCAGAGGAACTCT

Downstream 100 bases:

>100_bases
CATCGCCAGTTAAGGCATCGTAGGAAACTGCATCGGCAGGCTCGCGCAACAGTGATTTGACCCGTGGCCAAAAGCCACGG
AAAAACTCTGAGCGGCGATA

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MFDWIQPYLPPTNSASYYILRGTLTFLVVAVAARAISIIIRRAFLSNAQLLRHNLSERRRKTLRSLVSSLTNGLAILISL
FLIMGMFIQPSALFTFLGLFSAGLGFSARPYVSDFLGGITLLFEDQFALGDKVEIGDRQVVGCVERISLRMTYIRGESGE
LWLVPNGDIRTIRNFTRGKWSPASIKLTVPTTKLDETMIVLHQIISDPGDDVIETPEIISEDGEIGAVTTTITLKVKARY
SMAPAVRERLITQLQAALTEHHVLAADENRE

Sequences:

>Translated_271_residues
MFDWIQPYLPPTNSASYYILRGTLTFLVVAVAARAISIIIRRAFLSNAQLLRHNLSERRRKTLRSLVSSLTNGLAILISL
FLIMGMFIQPSALFTFLGLFSAGLGFSARPYVSDFLGGITLLFEDQFALGDKVEIGDRQVVGCVERISLRMTYIRGESGE
LWLVPNGDIRTIRNFTRGKWSPASIKLTVPTTKLDETMIVLHQIISDPGDDVIETPEIISEDGEIGAVTTTITLKVKARY
SMAPAVRERLITQLQAALTEHHVLAADENRE
>Mature_271_residues
MFDWIQPYLPPTNSASYYILRGTLTFLVVAVAARAISIIIRRAFLSNAQLLRHNLSERRRKTLRSLVSSLTNGLAILISL
FLIMGMFIQPSALFTFLGLFSAGLGFSARPYVSDFLGGITLLFEDQFALGDKVEIGDRQVVGCVERISLRMTYIRGESGE
LWLVPNGDIRTIRNFTRGKWSPASIKLTVPTTKLDETMIVLHQIISDPGDDVIETPEIISEDGEIGAVTTTITLKVKARY
SMAPAVRERLITQLQAALTEHHVLAADENRE

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30155; Mature: 30155

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDWIQPYLPPTNSASYYILRGTLTFLVVAVAARAISIIIRRAFLSNAQLLRHNLSERRR
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLRSLVSSLTNGLAILISLFLIMGMFIQPSALFTFLGLFSAGLGFSARPYVSDFLGGIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEE
LLFEDQFALGDKVEIGDRQVVGCVERISLRMTYIRGESGELWLVPNGDIRTIRNFTRGKW
EEEECCCCCCCEEECCCHHHHHHHHHHHHEEEEEECCCCCEEEEECCCHHHHHHHHCCCC
SPASIKLTVPTTKLDETMIVLHQIISDPGDDVIETPEIISEDGEIGAVTTTITLKVKARY
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEEEEEEEECC
SMAPAVRERLITQLQAALTEHHVLAADENRE
CCCHHHHHHHHHHHHHHHHHCEEEECCCCCC
>Mature Secondary Structure
MFDWIQPYLPPTNSASYYILRGTLTFLVVAVAARAISIIIRRAFLSNAQLLRHNLSERRR
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLRSLVSSLTNGLAILISLFLIMGMFIQPSALFTFLGLFSAGLGFSARPYVSDFLGGIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEE
LLFEDQFALGDKVEIGDRQVVGCVERISLRMTYIRGESGELWLVPNGDIRTIRNFTRGKW
EEEECCCCCCCEEECCCHHHHHHHHHHHHEEEEEECCCCCEEEEECCCHHHHHHHHCCCC
SPASIKLTVPTTKLDETMIVLHQIISDPGDDVIETPEIISEDGEIGAVTTTITLKVKARY
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEEEEEEEECC
SMAPAVRERLITQLQAALTEHHVLAADENRE
CCCHHHHHHHHHHHHHHHHHCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]