| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159899855
Identifier: 159899855
GI number: 159899855
Start: 4207704
End: 4208591
Strand: Reverse
Name: 159899855
Synonym: Haur_3338
Alternate gene names: NA
Gene position: 4208591-4207704 (Counterclockwise)
Preceding gene: 159899860
Following gene: 159899854
Centisome position: 66.31
GC content: 49.77
Gene sequence:
>888_bases ATGAAACAGTGGATGAGTCGGATGTTGTTGGGCGTATTAGCAATTGCCTTGAGCGGTTGTGTTGCCTCACAAGTCGAAAC CACAATCAGCGGTGATGGCAGTGGCACAAATACGTTTAAAGTAGGTATGGATGCCGAAACAATGGCCATGATGGCAAGCA TGGGTGGCACTGAGGGCGAAGATCCCTTTAAACAAACCAAAGATGATGTTTCAGGTTATCCAGCTGAGTGGAGCGCAACC ACCAGCGATTGGAAAGAAAAGCTTGGCGAAACCGAGTTCCAAGGCGTGCAGATCAACATGAAATTTGCTAATCTTGCAAC CTTGAACGAGCAGTTGAGCCAATTTTTGACTGACTCAGGCAGCAGCGATAGCCCAACTGGTCAAGCGCTATCGAATCTTA AAGTAACCGATGATGGCGAAACCTTCACTGTATCTGGCAATGCCATGGCCACCGATTTGGCTGCGGCTGCCGAGAGCGAA GGCGCTGGCATGCCTGGCATGGGCGATTCGTTGAAAAAGGCTGTGATCGTTTGGCAAGTAACTTTGCCAGGTGAAGTGAG CAGCGTTGAGCCAGCCGATATTGCAACCGTCAACGGCAGCACCGTTACTTGGAAAATTCCAGTTGATAAAACTGCTCAAT ATACCCTTAAGGCCGTTTCAACCAAGAGTGGTGGCGCTGGCGGCAGTAATTTGCCATTGATCCTTGGTGGCGTTGGCTTG TTGGTAGTCTTGGCAGGCGTTGGCTTCTTCGTGATGAGCCGCCGCAAAGCTGCTCCAGTTGCCGCTGGTTATCAACAATA TGGTGGTCAAACCTACGACCCCAATGCCCAACAAAATCAACAACAAGGCTATTACGACCCAAACAACGACCCTAACCGCA AACAATAA
Upstream 100 bases:
>100_bases TTGCTATCAGGATAGCACAGAACCTTGGTAGACATGGCATATATTGCCATCTATAATCGCAGTATCCTCCGTTAGCCAGT TTATTGAAGGAGCGAAGCCC
Downstream 100 bases:
>100_bases GCCAATTTGAAACCTTTTGAGCCAACGCTCCGTCTTTACGGCGGAGTGTTGGCGTTTTAGCTAACAAATTGCGGTACGAT GATAGTGAGCGATTTTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKQWMSRMLLGVLAIALSGCVASQVETTISGDGSGTNTFKVGMDAETMAMMASMGGTEGEDPFKQTKDDVSGYPAEWSAT TSDWKEKLGETEFQGVQINMKFANLATLNEQLSQFLTDSGSSDSPTGQALSNLKVTDDGETFTVSGNAMATDLAAAAESE GAGMPGMGDSLKKAVIVWQVTLPGEVSSVEPADIATVNGSTVTWKIPVDKTAQYTLKAVSTKSGGAGGSNLPLILGGVGL LVVLAGVGFFVMSRRKAAPVAAGYQQYGGQTYDPNAQQNQQQGYYDPNNDPNRKQ
Sequences:
>Translated_295_residues MKQWMSRMLLGVLAIALSGCVASQVETTISGDGSGTNTFKVGMDAETMAMMASMGGTEGEDPFKQTKDDVSGYPAEWSAT TSDWKEKLGETEFQGVQINMKFANLATLNEQLSQFLTDSGSSDSPTGQALSNLKVTDDGETFTVSGNAMATDLAAAAESE GAGMPGMGDSLKKAVIVWQVTLPGEVSSVEPADIATVNGSTVTWKIPVDKTAQYTLKAVSTKSGGAGGSNLPLILGGVGL LVVLAGVGFFVMSRRKAAPVAAGYQQYGGQTYDPNAQQNQQQGYYDPNNDPNRKQ >Mature_295_residues MKQWMSRMLLGVLAIALSGCVASQVETTISGDGSGTNTFKVGMDAETMAMMASMGGTEGEDPFKQTKDDVSGYPAEWSAT TSDWKEKLGETEFQGVQINMKFANLATLNEQLSQFLTDSGSSDSPTGQALSNLKVTDDGETFTVSGNAMATDLAAAAESE GAGMPGMGDSLKKAVIVWQVTLPGEVSSVEPADIATVNGSTVTWKIPVDKTAQYTLKAVSTKSGGAGGSNLPLILGGVGL LVVLAGVGFFVMSRRKAAPVAAGYQQYGGQTYDPNAQQNQQQGYYDPNNDPNRKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30883; Mature: 30883
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQWMSRMLLGVLAIALSGCVASQVETTISGDGSGTNTFKVGMDAETMAMMASMGGTEGE CHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCHHHHHHHHHCCCCCCC DPFKQTKDDVSGYPAEWSATTSDWKEKLGETEFQGVQINMKFANLATLNEQLSQFLTDSG CHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC SSDSPTGQALSNLKVTDDGETFTVSGNAMATDLAAAAESEGAGMPGMGDSLKKAVIVWQV CCCCCCHHHHHCCEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCEEEEEEEE TLPGEVSSVEPADIATVNGSTVTWKIPVDKTAQYTLKAVSTKSGGAGGSNLPLILGGVGL ECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEHHHHH LVVLAGVGFFVMSRRKAAPVAAGYQQYGGQTYDPNAQQNQQQGYYDPNNDPNRKQ HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKQWMSRMLLGVLAIALSGCVASQVETTISGDGSGTNTFKVGMDAETMAMMASMGGTEGE CHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCHHHHHHHHHCCCCCCC DPFKQTKDDVSGYPAEWSATTSDWKEKLGETEFQGVQINMKFANLATLNEQLSQFLTDSG CHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC SSDSPTGQALSNLKVTDDGETFTVSGNAMATDLAAAAESEGAGMPGMGDSLKKAVIVWQV CCCCCCHHHHHCCEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCEEEEEEEE TLPGEVSSVEPADIATVNGSTVTWKIPVDKTAQYTLKAVSTKSGGAGGSNLPLILGGVGL ECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEHHHHH LVVLAGVGFFVMSRRKAAPVAAGYQQYGGQTYDPNAQQNQQQGYYDPNNDPNRKQ HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA