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The map label for this gene is yfdE [H]

Identifier: 159898784

GI number: 159898784

Start: 2896059

End: 2896886

Strand: Reverse

Name: yfdE [H]

Synonym: Haur_2263

Alternate gene names: 159898784

Gene position: 2896886-2896059 (Counterclockwise)

Preceding gene: 159898785

Following gene: 159898781

Centisome position: 45.64

GC content: 51.81

Gene sequence:

>828_bases
ATGATTGTCTGCGATATTTCGGGCTATGGGAGTAGCGGGCCGTATCAGCATAAAAAAGCCTATGATCTATTGATTCAATG
CGAGGCGGGCGCGGTTTCGGTAACTGGCAGCGCCGATCAACCAGCCAAAGTTGGTATTCCAATTGCCGATATTGCTGGTG
GAATGTATGCCTACACGGGCATCTTGACTGCTTTATATCAGCGGCAAGCAACTGGCGAAGGCTGCCAGATCGAGGTTTCC
CTATTTGAGGCATTAGCCGAATGGATGGGTTTTCCGGCGTATTATAGTGGCTATAGCGGCCAGAATTTGCCACGCACTGG
CTTGCAACATGCCGCGATTGCGCCGTATGGAGCATTCGATTGTGCTGATGGGCAGGTCTTTTTGGCAGTGCAGAACCAGC
GCGAGTGGCAGCAATTTTGTGGCACTTTTTTGCGCCAACCAGCGCTGATCGAGCAACCAGCGTTTGCAACGGTCAGTCAG
CGGGTGGCGAATCGTCAAGCCTTAGAAAACCTAATCAATCAGCATACCCGCGCGTTGAATCTTGATCAAACGCTAGCCCA
GCTTGATGCTTTGGGGATTGCCAACGCCCGACTAAATAGCGTTTTAGATTTTTGGCAGCATCCGCAATTGGCGGCGCGAG
GGCGTTGGCGCAGCGTGATGAGCGAGGTTGGGCCAATTCAAGCGCTACTGCCACCAGTCAATTGGTCAAACGTTACCCCA
GCAATGCAGGGTATTCCAGCTTTGGGTGCTGCTACTCAGGCTATTTTGCACGAGCTTGGCTATACCCAAGCCGAGATTGA
GATATTGAAAACCCAAGCCATGATCTAA

Upstream 100 bases:

>100_bases
AATTATTAGCAACGGCTGATGTTTTTATTCAAAATTTAGCGCCACAAGCGAGCCAACGCTTAGGCTTTGGTGCCGAAACG
TTGCGTCGCGCAAATCCCAA

Downstream 100 bases:

>100_bases
CTAACAAAGCGATAGCCAATGCCGGCCTCGGTCAGCAAATGGCGTGGATTGCTGGGATCAGCTTCGAGTTTGCGGCGTAA
GCGCCCAATATAGACCCGTA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MIVCDISGYGSSGPYQHKKAYDLLIQCEAGAVSVTGSADQPAKVGIPIADIAGGMYAYTGILTALYQRQATGEGCQIEVS
LFEALAEWMGFPAYYSGYSGQNLPRTGLQHAAIAPYGAFDCADGQVFLAVQNQREWQQFCGTFLRQPALIEQPAFATVSQ
RVANRQALENLINQHTRALNLDQTLAQLDALGIANARLNSVLDFWQHPQLAARGRWRSVMSEVGPIQALLPPVNWSNVTP
AMQGIPALGAATQAILHELGYTQAEIEILKTQAMI

Sequences:

>Translated_275_residues
MIVCDISGYGSSGPYQHKKAYDLLIQCEAGAVSVTGSADQPAKVGIPIADIAGGMYAYTGILTALYQRQATGEGCQIEVS
LFEALAEWMGFPAYYSGYSGQNLPRTGLQHAAIAPYGAFDCADGQVFLAVQNQREWQQFCGTFLRQPALIEQPAFATVSQ
RVANRQALENLINQHTRALNLDQTLAQLDALGIANARLNSVLDFWQHPQLAARGRWRSVMSEVGPIQALLPPVNWSNVTP
AMQGIPALGAATQAILHELGYTQAEIEILKTQAMI
>Mature_275_residues
MIVCDISGYGSSGPYQHKKAYDLLIQCEAGAVSVTGSADQPAKVGIPIADIAGGMYAYTGILTALYQRQATGEGCQIEVS
LFEALAEWMGFPAYYSGYSGQNLPRTGLQHAAIAPYGAFDCADGQVFLAVQNQREWQQFCGTFLRQPALIEQPAFATVSQ
RVANRQALENLINQHTRALNLDQTLAQLDALGIANARLNSVLDFWQHPQLAARGRWRSVMSEVGPIQALLPPVNWSNVTP
AMQGIPALGAATQAILHELGYTQAEIEILKTQAMI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=262, Percent_Identity=27.0992366412214, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI300863124, Length=215, Percent_Identity=27.4418604651163, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI13376042, Length=215, Percent_Identity=27.4418604651163, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI87082093, Length=216, Percent_Identity=30.0925925925926, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788717, Length=300, Percent_Identity=26.3333333333333, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786222, Length=288, Percent_Identity=24.3055555555556, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648431, Length=279, Percent_Identity=29.7491039426523, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 29754; Mature: 29754

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVCDISGYGSSGPYQHKKAYDLLIQCEAGAVSVTGSADQPAKVGIPIADIAGGMYAYTG
CEEEEECCCCCCCCCCHHHHEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHCHHHHHHH
ILTALYQRQATGEGCQIEVSLFEALAEWMGFPAYYSGYSGQNLPRTGLQHAAIAPYGAFD
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCC
CADGQVFLAVQNQREWQQFCGTFLRQPALIEQPAFATVSQRVANRQALENLINQHTRALN
CCCCEEEEEECCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDQTLAQLDALGIANARLNSVLDFWQHPQLAARGRWRSVMSEVGPIQALLPPVNWSNVTP
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCH
AMQGIPALGAATQAILHELGYTQAEIEILKTQAMI
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIVCDISGYGSSGPYQHKKAYDLLIQCEAGAVSVTGSADQPAKVGIPIADIAGGMYAYTG
CEEEEECCCCCCCCCCHHHHEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHCHHHHHHH
ILTALYQRQATGEGCQIEVSLFEALAEWMGFPAYYSGYSGQNLPRTGLQHAAIAPYGAFD
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCC
CADGQVFLAVQNQREWQQFCGTFLRQPALIEQPAFATVSQRVANRQALENLINQHTRALN
CCCCEEEEEECCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDQTLAQLDALGIANARLNSVLDFWQHPQLAARGRWRSVMSEVGPIQALLPPVNWSNVTP
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCH
AMQGIPALGAATQAILHELGYTQAEIEILKTQAMI
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]