Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 159898785

GI number: 159898785

Start: 2896883

End: 2897233

Strand: Reverse

Name: yfdE [H]

Synonym: Haur_2264

Alternate gene names: 159898785

Gene position: 2897233-2896883 (Counterclockwise)

Preceding gene: 159898790

Following gene: 159898784

Centisome position: 45.65

GC content: 49.57

Gene sequence:

>351_bases
ATGTTGCCATTAACTGGAATTACGGTTGTTGCCCTTGAACAAGCGGTTGCTGCGCCATTCGCTACCCGTCAATTGGCCGA
TTTGGGGGCGCGGGTGATTAAAATCGAACGGCCTGAAGCTGGCGATTTTGCTCGTCACTACGATCAGGCTGTTCACGGCT
TATCGTCGCACTTTGTCTGGCTGAATCGTGGTAAAGAAAGCCTTACGCTCGATTTGAAGCAGCCACAAGCGCAAGTGATT
ATGCACCAATTATTAGCAACGGCTGATGTTTTTATTCAAAATTTAGCGCCACAAGCGAGCCAACGCTTAGGCTTTGGTGC
CGAAACGTTGCGTCGCGCAAATCCCAAATGA

Upstream 100 bases:

>100_bases
TTAATTAGCTCGGCGTAAACAAAATATAAATATTTGCAAAATTAAGCCAAATTTCAGGTATATCTAGGATTGAAATTGGG
TTAGCGCCTATGAGGTATCT

Downstream 100 bases:

>100_bases
TTGTCTGCGATATTTCGGGCTATGGGAGTAGCGGGCCGTATCAGCATAAAAAAGCCTATGATCTATTGATTCAATGCGAG
GCGGGCGCGGTTTCGGTAAC

Product: putative alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MLPLTGITVVALEQAVAAPFATRQLADLGARVIKIERPEAGDFARHYDQAVHGLSSHFVWLNRGKESLTLDLKQPQAQVI
MHQLLATADVFIQNLAPQASQRLGFGAETLRRANPK

Sequences:

>Translated_116_residues
MLPLTGITVVALEQAVAAPFATRQLADLGARVIKIERPEAGDFARHYDQAVHGLSSHFVWLNRGKESLTLDLKQPQAQVI
MHQLLATADVFIQNLAPQASQRLGFGAETLRRANPK
>Mature_116_residues
MLPLTGITVVALEQAVAAPFATRQLADLGARVIKIERPEAGDFARHYDQAVHGLSSHFVWLNRGKESLTLDLKQPQAQVI
MHQLLATADVFIQNLAPQASQRLGFGAETLRRANPK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=114, Percent_Identity=38.5964912280702, Blast_Score=89, Evalue=6e-19,
Organism=Homo sapiens, GI300863126, Length=114, Percent_Identity=38.5964912280702, Blast_Score=89, Evalue=6e-19,
Organism=Homo sapiens, GI300863124, Length=114, Percent_Identity=38.5964912280702, Blast_Score=89, Evalue=8e-19,
Organism=Homo sapiens, GI42822893, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI266458395, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI266458397, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI266458393, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI266456254, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI42794625, Length=115, Percent_Identity=35.6521739130435, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI13376042, Length=81, Percent_Identity=40.7407407407407, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082093, Length=114, Percent_Identity=39.4736842105263, Blast_Score=96, Evalue=7e-22,
Organism=Escherichia coli, GI1788717, Length=115, Percent_Identity=35.6521739130435, Blast_Score=79, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24648431, Length=117, Percent_Identity=39.3162393162393, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 12723; Mature: 12723

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLTGITVVALEQAVAAPFATRQLADLGARVIKIERPEAGDFARHYDQAVHGLSSHFVW
CCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHCEEE
LNRGKESLTLDLKQPQAQVIMHQLLATADVFIQNLAPQASQRLGFGAETLRRANPK
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCC
>Mature Secondary Structure
MLPLTGITVVALEQAVAAPFATRQLADLGARVIKIERPEAGDFARHYDQAVHGLSSHFVW
CCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHCEEE
LNRGKESLTLDLKQPQAQVIMHQLLATADVFIQNLAPQASQRLGFGAETLRRANPK
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]