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The map label for this gene is yodJ [H]

Identifier: 159898771

GI number: 159898771

Start: 2868184

End: 2869095

Strand: Reverse

Name: yodJ [H]

Synonym: Haur_2250

Alternate gene names: 159898771

Gene position: 2869095-2868184 (Counterclockwise)

Preceding gene: 159898772

Following gene: 159898770

Centisome position: 45.21

GC content: 53.51

Gene sequence:

>912_bases
GTGAAGTTTTTGCTGGTCGCACTATGCGGTTTGGGCTTGTTAGTTGGCTGTGGAACTGTTTCACAGGCGGCGATTACTGA
TCGCCAAGTCCCTTTGCAACCAGTATTGATTGCGCCAAGCGCCACCCCAACACCCAAGCCAACCCGCACGTCTGTGCCAA
CGCCGACCTTAACGCCGCGCCCGACGAATACCCCAACCCCGATTGCTGTACCACTGTTGCCGACGCTTGATCCTGAGGCT
GAATTGCTTGATTTGCGCTTGGCTGGCGTGCGTGGCTCGCGTTCGGGCCAACTTTTGCGCCGCGAGGCAGTAGCCGATCT
CAAAGCGTTAATTGATGCTGCACGCCGTGATGGCTTTGTGCTGGAAATTCGCTCGGCCTATCGTTCGTATGCTGAGCAAG
CGAGCACCTTCGAGGGTTGGGTGCAATATGAATTAAGCAGTGCCGCCCAAACTGGCAAGCCGATTAGCCGTAAACAGGCG
ATTGCCTATGCCGCCACCTACAGCGCCAAACCTGGCACCAGCGAACATCAAACTGGCTTGACTGTCGATTTATTGCCCCA
AGGTGCGCCCGAAATTGGCTTTCGAATTCCCGATCCGTTGAAAGATTGGCTCAATGCCAATGCCTACAAATATGGCTGGG
TTCAATCGTACCCAATTAAATATCGCGATGGCGAGTTGATTACCTATGAATTAATGGGCTACACCAGTGAGCCATGGCAT
TGGCGCTGGCAAGGCCGTGATTCAGCCAAATCGTTGTATGATCAAGGCTATTTGGATACTGATTCGTTGCTCGTTCCCCC
AACGTTGCCACGCATTTGCGATGCTGAGCATGACCCCTGCATGATTCTTAGTGCTGCTCCGGCTAAACTTGTTGCCATCC
CAACCAGTACCCCCATTGCCGTAGCTGAATAG

Upstream 100 bases:

>100_bases
CCTGCTGCGATTGGGAGCGGGGTCGTGGCTACTACCTAGTTGCATAATTACGGCGTTTTGGTACAATCGCAGCCGTTGGC
TGACGAATTGGGGTCTTTGC

Downstream 100 bases:

>100_bases
CCAGGTTGCTGAACTGCGAAGATTGTTTTTTGATCCACGAAGGACACGAAGGTCACGAAGGCTAAGTTTTTAGCCACGAA
TTGCACGAATTACACGAATT

Product: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKFLLVALCGLGLLVGCGTVSQAAITDRQVPLQPVLIAPSATPTPKPTRTSVPTPTLTPRPTNTPTPIAVPLLPTLDPEA
ELLDLRLAGVRGSRSGQLLRREAVADLKALIDAARRDGFVLEIRSAYRSYAEQASTFEGWVQYELSSAAQTGKPISRKQA
IAYAATYSAKPGTSEHQTGLTVDLLPQGAPEIGFRIPDPLKDWLNANAYKYGWVQSYPIKYRDGELITYELMGYTSEPWH
WRWQGRDSAKSLYDQGYLDTDSLLVPPTLPRICDAEHDPCMILSAAPAKLVAIPTSTPIAVAE

Sequences:

>Translated_303_residues
MKFLLVALCGLGLLVGCGTVSQAAITDRQVPLQPVLIAPSATPTPKPTRTSVPTPTLTPRPTNTPTPIAVPLLPTLDPEA
ELLDLRLAGVRGSRSGQLLRREAVADLKALIDAARRDGFVLEIRSAYRSYAEQASTFEGWVQYELSSAAQTGKPISRKQA
IAYAATYSAKPGTSEHQTGLTVDLLPQGAPEIGFRIPDPLKDWLNANAYKYGWVQSYPIKYRDGELITYELMGYTSEPWH
WRWQGRDSAKSLYDQGYLDTDSLLVPPTLPRICDAEHDPCMILSAAPAKLVAIPTSTPIAVAE
>Mature_303_residues
MKFLLVALCGLGLLVGCGTVSQAAITDRQVPLQPVLIAPSATPTPKPTRTSVPTPTLTPRPTNTPTPIAVPLLPTLDPEA
ELLDLRLAGVRGSRSGQLLRREAVADLKALIDAARRDGFVLEIRSAYRSYAEQASTFEGWVQYELSSAAQTGKPISRKQA
IAYAATYSAKPGTSEHQTGLTVDLLPQGAPEIGFRIPDPLKDWLNANAYKYGWVQSYPIKYRDGELITYELMGYTSEPWH
WRWQGRDSAKSLYDQGYLDTDSLLVPPTLPRICDAEHDPCMILSAAPAKLVAIPTSTPIAVAE

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 32982; Mature: 32982

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLLVALCGLGLLVGCGTVSQAAITDRQVPLQPVLIAPSATPTPKPTRTSVPTPTLTPR
CHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
PTNTPTPIAVPLLPTLDPEAELLDLRLAGVRGSRSGQLLRREAVADLKALIDAARRDGFV
CCCCCCCEEEEECCCCCCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
LEIRSAYRSYAEQASTFEGWVQYELSSAAQTGKPISRKQAIAYAATYSAKPGTSEHQTGL
EEHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCHHHHEEEEEEECCCCCCCCCCCCC
TVDLLPQGAPEIGFRIPDPLKDWLNANAYKYGWVQSYPIKYRDGELITYELMGYTSEPWH
EEEECCCCCCCCCCCCCHHHHHHHCCCCEEECCEECCCEEECCCCEEEEEEECCCCCCCE
WRWQGRDSAKSLYDQGYLDTDSLLVPPTLPRICDAEHDPCMILSAAPAKLVAIPTSTPIA
EEECCCHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCEE
VAE
ECC
>Mature Secondary Structure
MKFLLVALCGLGLLVGCGTVSQAAITDRQVPLQPVLIAPSATPTPKPTRTSVPTPTLTPR
CHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
PTNTPTPIAVPLLPTLDPEAELLDLRLAGVRGSRSGQLLRREAVADLKALIDAARRDGFV
CCCCCCCEEEEECCCCCCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
LEIRSAYRSYAEQASTFEGWVQYELSSAAQTGKPISRKQAIAYAATYSAKPGTSEHQTGL
EEHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCHHHHEEEEEEECCCCCCCCCCCCC
TVDLLPQGAPEIGFRIPDPLKDWLNANAYKYGWVQSYPIKYRDGELITYELMGYTSEPWH
EEEECCCCCCCCCCCCCHHHHHHHCCCCEEECCEECCCEEECCCCEEEEEEECCCCCCCE
WRWQGRDSAKSLYDQGYLDTDSLLVPPTLPRICDAEHDPCMILSAAPAKLVAIPTSTPIA
EEECCCHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCEE
VAE
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]