Click here to switch to the map view.

The map label for this gene is ywnA [H]

Identifier: 159898645

GI number: 159898645

Start: 2668466

End: 2668912

Strand: Direct

Name: ywnA [H]

Synonym: Haur_2124

Alternate gene names: 159898645

Gene position: 2668466-2668912 (Clockwise)

Preceding gene: 159898637

Following gene: 159898646

Centisome position: 42.05

GC content: 51.01

Gene sequence:

>447_bases
ATGAGTGCAAGCAGTCGATTTGCTGTGGCGGTGCATATTTTGGCCCTGCTTGAAACCAATCCTAATCAAGCTCTTTCCTC
AAGCTGTATTGCAGCCAGCGTCAATACCAATCCGGTCGTTATTCGGCGAATCTTGGGTATGCTCAACCGAGCAGGCTTGG
TCTATACCGAATATGGCGCAGATGGCGGCACTCGTTTAGCCCGTTCTGCTGATGAAATTACGCTCAACGATATCTATCAT
GCCACCGAAAATTGTCGCATTCTGCCCTTGCATGCTAGCTCGCCCAACCAAGATTGCCGCTGTGGGCGCACGATTCAGCC
AGTGCTCAGCACCATTTTTAGCCATGCCGAGGCTGCCATGCAACAAGTATTGGCCAATAAAAGCCTCGCCGAAGTTGTGA
ATGAGATGCAGTGCAAGCCCAATCCGTCAGCTTTGCCCCATTCGTAA

Upstream 100 bases:

>100_bases
ATAAGGTCATCAAATCATCACCAAACACCTAGGTAAGCATAATTGACAGCCGATTAAAATGTAACTATACTTGTTTCATA
TTCACAATGAGGCAAAAAAC

Downstream 100 bases:

>100_bases
TTAAAAAAATCGCGCCAATCTGTTAACGCCCGTGACAATCCTTGTCGTGGGCTAAAGCTGCATGCTATGATGCAGCACGG
AGAGGAATTAGCGGTAGGAA

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGADGGTRLARSADEITLNDIYH
ATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAMQQVLANKSLAEVVNEMQCKPNPSALPHS

Sequences:

>Translated_148_residues
MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGADGGTRLARSADEITLNDIYH
ATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAMQQVLANKSLAEVVNEMQCKPNPSALPHS
>Mature_147_residues
SASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGADGGTRLARSADEITLNDIYHA
TENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAMQQVLANKSLAEVVNEMQCKPNPSALPHS

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15870; Mature: 15739

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGA
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHCCCEEEEECCC
DGGTRLARSADEITLNDIYHATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAM
CCCHHHHCCCCCEEHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QQVLANKSLAEVVNEMQCKPNPSALPHS
HHHHCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHCCCEEEEECCC
DGGTRLARSADEITLNDIYHATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAM
CCCHHHHCCCCCEEHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QQVLANKSLAEVVNEMQCKPNPSALPHS
HHHHCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]