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The map label for this gene is yjgF [C]

Identifier: 159896677

GI number: 159896677

Start: 176419

End: 176799

Strand: Reverse

Name: yjgF [C]

Synonym: Haur_0144

Alternate gene names: 159896677

Gene position: 176799-176419 (Counterclockwise)

Preceding gene: 159896678

Following gene: 159896672

Centisome position: 2.79

GC content: 55.91

Gene sequence:

>381_bases
ATGACCCGTGAAGTTATCAGCACGCCCAACGCTCCCGCCGCCATCGGCCCATACTCACAAGCAATCGCCATTGATGGATT
GTTGTTCTGCTCAGGCCAAATTCCGCTTGACCCAGCAACTGGCCAAGTGATCGAGGGCGACGTAACCGCCCAAACCCGCC
GCGTGATGGAAAACATTCGGGCAGTGCTGACGGCAGCCAACACCAGCTTCGAAAAAGTGGTCAAAACCACGATTTTCTTG
GCCGATATGAACGACTTCGCCGCCGTTAATGCCGTCTATGGCGAATACTTTCCTGAAAACCCGCCAGCTCGCTCGACCGT
GCAAGTGGCGCGTTTGCCCCGCGATGTGCAAGTTGAAGTCGAAGTGATTGTGCTGCGCTAG

Upstream 100 bases:

>100_bases
TCGCATCGATGCTATTGCGATCACACTCTCCCGTGGTCAACCTCAACTTGAACATTTTCAAGCAATTTCAATTGAATAAG
CAACTATCAAGGAGTTTTCA

Downstream 100 bases:

>100_bases
CGTTCCGCATTTGCTATCCCGATCCTTCCAAGGGTAGGTTATTAACCAAATCATTGGATATAACGATGCATTAATCTCAC
CACCCTTCCCTCCCGCCTCA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTREVISTPNAPAAIGPYSQAIAIDGLLFCSGQIPLDPATGQVIEGDVTAQTRRVMENIRAVLTAANTSFEKVVKTTIFL
ADMNDFAAVNAVYGEYFPENPPARSTVQVARLPRDVQVEVEVIVLR

Sequences:

>Translated_126_residues
MTREVISTPNAPAAIGPYSQAIAIDGLLFCSGQIPLDPATGQVIEGDVTAQTRRVMENIRAVLTAANTSFEKVVKTTIFL
ADMNDFAAVNAVYGEYFPENPPARSTVQVARLPRDVQVEVEVIVLR
>Mature_125_residues
TREVISTPNAPAAIGPYSQAIAIDGLLFCSGQIPLDPATGQVIEGDVTAQTRRVMENIRAVLTAANTSFEKVVKTTIFLA
DMNDFAAVNAVYGEYFPENPPARSTVQVARLPRDVQVEVEVIVLR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=46.031746031746, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=49.2063492063492, Blast_Score=128, Evalue=9e-32,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=46.4566929133858, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=32.520325203252, Blast_Score=80, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=48, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=48, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=48, Blast_Score=121, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=40.6779661016949, Blast_Score=103, Evalue=7e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=46.078431372549, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=45.6, Blast_Score=118, Evalue=9e-28,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13620; Mature: 13489

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREVISTPNAPAAIGPYSQAIAIDGLLFCSGQIPLDPATGQVIEGDVTAQTRRVMENIR
CCCCCCCCCCCCCCCCCCCHHEEECEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHH
AVLTAANTSFEKVVKTTIFLADMNDFAAVNAVYGEYFPENPPARSTVQVARLPRDVQVEV
HHHHHCCCCHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEE
EVIVLR
EEEEEC
>Mature Secondary Structure 
TREVISTPNAPAAIGPYSQAIAIDGLLFCSGQIPLDPATGQVIEGDVTAQTRRVMENIR
CCCCCCCCCCCCCCCCCCHHEEECEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHH
AVLTAANTSFEKVVKTTIFLADMNDFAAVNAVYGEYFPENPPARSTVQVARLPRDVQVEV
HHHHHCCCCHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEE
EVIVLR
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]