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The map label for this gene is 15920657

Identifier: 15920657

GI number: 15920657

Start: 451555

End: 452256

Strand: Reverse

Name: 15920657

Synonym: ST0445

Alternate gene names: NA

Gene position: 452256-451555 (Counterclockwise)

Preceding gene: 15920658

Following gene: 15920656

Centisome position: 16.78

GC content: 32.76

Gene sequence:

>702_bases
ATGACCAAGAAAGAAGAATATGTTATCGCTAGATATGAGCATGGTGGTGAAAGATTTGAAATACTAGTAAAACCTAAAGA
AGCTAACGAATTAAAAAGTGGGAAAAGTATAAGTTTGTCTGATGTTGTTGTATCCGATGAAATATATAAGGATGTAAAAA
AAGGGCTTAAAGCGTCTCCTTCAGCTTTAAAAAAAGTTTTTGGAACCACTGACTTTGAGGAAATCGCACGGCAAATAATT
CTTAAAGGAGAAATTCAAGTGACTGCAGAGCAAAGAAAAGAAATGATAGAGAATAAAAAGAAACAAATAATAGATTATAT
TTCAAGAAACGCTATAGATCCTAAAACTCATTTACCTATACCTAGAACTCGAATTGAAATGGCAATGGAGCAAGCTAGAG
TCCAAATAGATCCTAATAAAGATGTAGAGGGACAAGCATTGCAAATAATAAAAGAAATAGCTAAAGTGATTCCTATAAAA
GTTGCTAAAGCGTTAATAGAAATAAAAGTTGATCCAAAACATAGTTCGAAAGTAAAGTCACAACTCCATAATTTGGGTGA
AGTAAAGAAGACTAATTGGCTAGGTGATGGCACTTTAATAGCTGAATTAGAAATCCCAGCAGGAATGCAACAGGAGGTTA
TAGATAAGTTAAATTCTCTAACTAAAGGAGAAGTTGAAGTAAAGATTCTTCAAGTGAAGTGA

Upstream 100 bases:

>100_bases
GTTGGATTTGCAGATGTAGATTCCGGAATGTTTAGAAAGATGAGTTTCGAAGAAAGAGCATCAATATTACAAAAATTATA
ATTGGGGTGAAAATAATTTC

Downstream 100 bases:

>100_bases
GATAAAAATGTCTAATAGTAAGATATATTTTGAAGATAGAAGCATAGTCACCCCAGGAGATTTAATTGCCGAAGGAGACT
TTCAAATACCATGGTCACCA

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTKKEEYVIARYEHGGERFEILVKPKEANELKSGKSISLSDVVVSDEIYKDVKKGLKASPSALKKVFGTTDFEEIARQII
LKGEIQVTAEQRKEMIENKKKQIIDYISRNAIDPKTHLPIPRTRIEMAMEQARVQIDPNKDVEGQALQIIKEIAKVIPIK
VAKALIEIKVDPKHSSKVKSQLHNLGEVKKTNWLGDGTLIAELEIPAGMQQEVIDKLNSLTKGEVEVKILQVK

Sequences:

>Translated_233_residues
MTKKEEYVIARYEHGGERFEILVKPKEANELKSGKSISLSDVVVSDEIYKDVKKGLKASPSALKKVFGTTDFEEIARQII
LKGEIQVTAEQRKEMIENKKKQIIDYISRNAIDPKTHLPIPRTRIEMAMEQARVQIDPNKDVEGQALQIIKEIAKVIPIK
VAKALIEIKVDPKHSSKVKSQLHNLGEVKKTNWLGDGTLIAELEIPAGMQQEVIDKLNSLTKGEVEVKILQVK
>Mature_232_residues
TKKEEYVIARYEHGGERFEILVKPKEANELKSGKSISLSDVVVSDEIYKDVKKGLKASPSALKKVFGTTDFEEIARQIIL
KGEIQVTAEQRKEMIENKKKQIIDYISRNAIDPKTHLPIPRTRIEMAMEQARVQIDPNKDVEGQALQIIKEIAKVIPIKV
AKALIEIKVDPKHSSKVKSQLHNLGEVKKTNWLGDGTLIAELEIPAGMQQEVIDKLNSLTKGEVEVKILQVK

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=154, Percent_Identity=30.5194805194805, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25144459, Length=226, Percent_Identity=25.6637168141593, Blast_Score=81, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6323050, Length=164, Percent_Identity=27.4390243902439, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24659572, Length=211, Percent_Identity=27.4881516587678, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26255; Mature: 26124

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKEEYVIARYEHGGERFEILVKPKEANELKSGKSISLSDVVVSDEIYKDVKKGLKASP
CCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
SALKKVFGTTDFEEIARQIILKGEIQVTAEQRKEMIENKKKQIIDYISRNAIDPKTHLPI
HHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PRTRIEMAMEQARVQIDPNKDVEGQALQIIKEIAKVIPIKVAKALIEIKVDPKHSSKVKS
CHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH
QLHNLGEVKKTNWLGDGTLIAELEIPAGMQQEVIDKLNSLTKGEVEVKILQVK
HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TKKEEYVIARYEHGGERFEILVKPKEANELKSGKSISLSDVVVSDEIYKDVKKGLKASP
CCCCCEEEEEEECCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
SALKKVFGTTDFEEIARQIILKGEIQVTAEQRKEMIENKKKQIIDYISRNAIDPKTHLPI
HHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PRTRIEMAMEQARVQIDPNKDVEGQALQIIKEIAKVIPIKVAKALIEIKVDPKHSSKVKS
CHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH
QLHNLGEVKKTNWLGDGTLIAELEIPAGMQQEVIDKLNSLTKGEVEVKILQVK
HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]