Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 159041940

GI number: 159041940

Start: 1450256

End: 1450711

Strand: Reverse

Name: ycfF [C]

Synonym: Cmaq_1376

Alternate gene names: 159041940

Gene position: 1450711-1450256 (Counterclockwise)

Preceding gene: 159041944

Following gene: 159041938

Centisome position: 69.83

GC content: 44.08

Gene sequence:

>456_bases
ATGGATGAGTGCATCTTCTGCAGGATAATAGGGAGGGAGGCACCAGGCCATGTGGTGTATGAGGATGATGACGTAATAGC
AATACTGGATAAGTATCCAATAAATAAGGGGCATATATTAGTTATGCCTAAGAGGCATTACAGGGATATTTTCGAAATAC
CCCCTGAGGCATTATGTAAAGTAATGAAGGTTGCTAAACTAATGGCTAGGGCGGTGGTTAATGGACTTAAGGCTGATGGT
GTTAGACTTATCCAGAATAACGGCCCCTCAGCTGGACAAGTGGTATTCCACTTCCACGTCCACGTAATACCATACTACGG
TGGTGGTTACAGGGCACATAGAGTGGAGTTAAGTGAGGCGGAGGCTATTGAGGTGGTTAGTAAGGTTACGGAAGCCTTAA
GGAAGATTAATGAAGACTCCTCCCTTAAAGGTGACGAGAATACAGCAATAAGTTAA

Upstream 100 bases:

>100_bases
ACAAGCACTATCACCATTTTAGATTTTATAAGGCTTACGACCCTTAACCCAGGTAATAGCTGGGAACAATTAAAATAACC
TCCGTGAGGGGGTGGTAATG

Downstream 100 bases:

>100_bases
GTTACTTCCTCAAAATCATCCTCACCATGATGCTTAAGCACTTTTACATCATACGCCTTAAGTACTTTAATAGCCTCCGC
AGTCTCCTTAACATCATTAA

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MDECIFCRIIGREAPGHVVYEDDDVIAILDKYPINKGHILVMPKRHYRDIFEIPPEALCKVMKVAKLMARAVVNGLKADG
VRLIQNNGPSAGQVVFHFHVHVIPYYGGGYRAHRVELSEAEAIEVVSKVTEALRKINEDSSLKGDENTAIS

Sequences:

>Translated_151_residues
MDECIFCRIIGREAPGHVVYEDDDVIAILDKYPINKGHILVMPKRHYRDIFEIPPEALCKVMKVAKLMARAVVNGLKADG
VRLIQNNGPSAGQVVFHFHVHVIPYYGGGYRAHRVELSEAEAIEVVSKVTEALRKINEDSSLKGDENTAIS
>Mature_151_residues
MDECIFCRIIGREAPGHVVYEDDDVIAILDKYPINKGHILVMPKRHYRDIFEIPPEALCKVMKVAKLMARAVVNGLKADG
VRLIQNNGPSAGQVVFHFHVHVIPYYGGGYRAHRVELSEAEAIEVVSKVTEALRKINEDSSLKGDENTAIS

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17506713, Length=103, Percent_Identity=33.9805825242718, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320078, Length=101, Percent_Identity=41.5841584158416, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 16838; Mature: 16838

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDECIFCRIIGREAPGHVVYEDDDVIAILDKYPINKGHILVMPKRHYRDIFEIPPEALCK
CCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHCCCHHHHHH
VMKVAKLMARAVVNGLKADGVRLIQNNGPSAGQVVFHFHVHVIPYYGGGYRAHRVELSEA
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCEEEEEEECCHH
EAIEVVSKVTEALRKINEDSSLKGDENTAIS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDECIFCRIIGREAPGHVVYEDDDVIAILDKYPINKGHILVMPKRHYRDIFEIPPEALCK
CCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHCCCHHHHHH
VMKVAKLMARAVVNGLKADGVRLIQNNGPSAGQVVFHFHVHVIPYYGGGYRAHRVELSEA
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCEEEEEEECCHH
EAIEVVSKVTEALRKINEDSSLKGDENTAIS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3208756; 1472710 [H]