| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is yflN [H]
Identifier: 159041938
GI number: 159041938
Start: 1448785
End: 1449363
Strand: Reverse
Name: yflN [H]
Synonym: Cmaq_1374
Alternate gene names: 159041938
Gene position: 1449363-1448785 (Counterclockwise)
Preceding gene: 159041940
Following gene: 159041937
Centisome position: 69.76
GC content: 45.42
Gene sequence:
>579_bases ATGGATGTTTACGTAATAAGAGGTATGTCGAATAGTTATTTAACCAGTAATGGTTTATTAATTGATGCTGGTGTTAGGGT TAGGGATGTTTTGAGGATTTCAAGGGAGCAGGGTGTGGAGGTTAGGTACCTCCTCATAACTCACTACCATATTGACCACA TTAGGTATGCGTGGGATATTGTTAAGCAATTCCACTGCAGTGTGGTTGCATCGGTGGCTGATGCTAGAGTTATTGAGGGT GAGGAGAAGCCTAGGGCTGCGGGTTTCCTTCAATTGCTGGTTTCACGCTTATTTAGGTTTAGGCCTGTTAAGGTTAATCT TAAGGTCAATGATGGTGACGTGATTGAGGGGTATGAAGCCATATATGCGCCAGGGCATACCCCAGGCAGTACAGCGTACT TTAAGGATGGGGTCCTCTTCAGTGGTGATGCGATAGTTGAACGTGAGGGTAAGCCGGTGTTACCGCCGAGGGGTTTTACG GTAAACATGAGTGAGGCCATGAAGAGTTTCAGTAAGTTAATGAGCCTTAAACCTAAGGTAATTTACCCGGGGCATGGGAA ACCAATAGTAGTGGGTTAG
Upstream 100 bases:
>100_bases GTCGTGAAAACAGTATTCATTATTACTTCATTTCAATGAATTAGGGTTAATGTTACTCCATATAAGTTAGTTTTAAAAGT TCATGCATTAACTCGTAGTC
Downstream 100 bases:
>100_bases TTTGATTAAAAAGTAGTAATCATGGGTTTAATGAATCAACTGTTAAATATTCCTAAGGTATTAATTAATCTATGTCTAAG TTAACGGTACTGGCTGTGGC
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MDVYVIRGMSNSYLTSNGLLIDAGVRVRDVLRISREQGVEVRYLLITHYHIDHIRYAWDIVKQFHCSVVASVADARVIEG EEKPRAAGFLQLLVSRLFRFRPVKVNLKVNDGDVIEGYEAIYAPGHTPGSTAYFKDGVLFSGDAIVEREGKPVLPPRGFT VNMSEAMKSFSKLMSLKPKVIYPGHGKPIVVG
Sequences:
>Translated_192_residues MDVYVIRGMSNSYLTSNGLLIDAGVRVRDVLRISREQGVEVRYLLITHYHIDHIRYAWDIVKQFHCSVVASVADARVIEG EEKPRAAGFLQLLVSRLFRFRPVKVNLKVNDGDVIEGYEAIYAPGHTPGSTAYFKDGVLFSGDAIVEREGKPVLPPRGFT VNMSEAMKSFSKLMSLKPKVIYPGHGKPIVVG >Mature_192_residues MDVYVIRGMSNSYLTSNGLLIDAGVRVRDVLRISREQGVEVRYLLITHYHIDHIRYAWDIVKQFHCSVVASVADARVIEG EEKPRAAGFLQLLVSRLFRFRPVKVNLKVNDGDVIEGYEAIYAPGHTPGSTAYFKDGVLFSGDAIVEREGKPVLPPRGFT VNMSEAMKSFSKLMSLKPKVIYPGHGKPIVVG
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 21405; Mature: 21405
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVYVIRGMSNSYLTSNGLLIDAGVRVRDVLRISREQGVEVRYLLITHYHIDHIRYAWDI CCEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHH VKQFHCSVVASVADARVIEGEEKPRAAGFLQLLVSRLFRFRPVKVNLKVNDGDVIEGYEA HHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCEE IYAPGHTPGSTAYFKDGVLFSGDAIVEREGKPVLPPRGFTVNMSEAMKSFSKLMSLKPKV EECCCCCCCCCEEEECCEEECCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCE IYPGHGKPIVVG EECCCCCEEEEC >Mature Secondary Structure MDVYVIRGMSNSYLTSNGLLIDAGVRVRDVLRISREQGVEVRYLLITHYHIDHIRYAWDI CCEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHH VKQFHCSVVASVADARVIEGEEKPRAAGFLQLLVSRLFRFRPVKVNLKVNDGDVIEGYEA HHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCEE IYAPGHTPGSTAYFKDGVLFSGDAIVEREGKPVLPPRGFTVNMSEAMKSFSKLMSLKPKV EECCCCCCCCCEEEECCEEECCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCE IYPGHGKPIVVG EECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377; 10972810; 11029430 [H]