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The map label for this gene is rps4p

Identifier: 159041669

GI number: 159041669

Start: 1162377

End: 1162922

Strand: Reverse

Name: rps4p

Synonym: Cmaq_1103

Alternate gene names: 159041669

Gene position: 1162922-1162377 (Counterclockwise)

Preceding gene: 159041671

Following gene: 159041668

Centisome position: 55.98

GC content: 44.87

Gene sequence:

>546_bases
ATGGGGGATCCTAAGAGGCCGAAGAAGAAGTATGTTGAGGGGAAGCCGAAGAGGCTATGGAATAGTGACTTATTGATGAG
TGAGCTTAGGCTTATTGGTGAGTATGGTTTGAGGAATAAGAAGGAGCTTTGGTTAGCCAGAGCATTATTGAGGAGCATTA
AGCATAGGGCTAGGGAGATACTTTCAGCACCAATGGAGATTAGGGGGGAGGCTGAGAAGAGGCTTAAGGATAGGTTATTT
AGAATGGGGTTAATAAGCGATATTAATATACCATTGGATTCAGTACTAGCACTGGATGTAACAGCAGTACTTGAACGCAG
GCTTCAAACACTAGTGTATAGGAAGGGTATGGCTAGGTCAATTCATGAGGCCAGGCAATTAATAGTGCACGGTCACATAT
CAATAAATGGTGTTAGAGTCAGGTCGCCTGGTTACCTTGTCCCAAGGAACCTTGAGGATGGCATAGGCTTCGCACCAACG
TCACGCATAGTTAAGGCTAAGGTAACTCAACAGGTTAATCAGGGAGGGCAAGCGGTTAATCAATGA

Upstream 100 bases:

>100_bases
CTATTTTTAGATTAAGCAGTATGAACTTTAAGTTATTATAATTACCCCGGTGAATTAATGATGGGAAATATTTATATACC
ATATACTCACGTTGAGCGTA

Downstream 100 bases:

>100_bases
GGTTTGAATAATGCTTAATAAGGATACCCTTAACCCAATTCATTGAATATGAGGAAACTATTACTAATATTAGTGCTTGC
AATGGCTTCACTGGCTATTG

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MGDPKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSAPMEIRGEAEKRLKDRLF
RMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPT
SRIVKAKVTQQVNQGGQAVNQ

Sequences:

>Translated_181_residues
MGDPKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSAPMEIRGEAEKRLKDRLF
RMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPT
SRIVKAKVTQQVNQGGQAVNQ
>Mature_180_residues
GDPKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSAPMEIRGEAEKRLKDRLFR
MGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS
RIVKAKVTQQVNQGGQAVNQ

Specific function: With S5 and S12 plays an important role in translational accuracy

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI14141193, Length=159, Percent_Identity=38.9937106918239, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17535707, Length=156, Percent_Identity=36.5384615384615, Blast_Score=93, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6325176, Length=165, Percent_Identity=42.4242424242424, Blast_Score=106, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319666, Length=165, Percent_Identity=41.8181818181818, Blast_Score=105, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6321942, Length=149, Percent_Identity=26.8456375838926, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24661711, Length=164, Percent_Identity=39.0243902439024, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24661707, Length=164, Percent_Identity=39.0243902439024, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24661715, Length=136, Percent_Identity=42.6470588235294, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4_CALMQ (A8MDS5)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540921.1
- ProteinModelPortal:   A8MDS5
- SMR:   A8MDS5
- GeneID:   5709692
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_1103
- HOGENOM:   HBG588353
- OMA:   RNKRELW
- ProtClustDB:   PRK04051
- BioCyc:   CMAQ397948:CMAQ_1103-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01306_A
- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942
- PANTHER:   PTHR11831
- SMART:   SM00363
- TIGRFAMs:   TIGR01018

Pfam domain/function: PF01479 S4

EC number: NA

Molecular weight: Translated: 20605; Mature: 20473

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS00632 RIBOSOMAL_S4; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDPKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREI
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LSAPMEIRGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARS
HHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTSRIVKAKVTQQVNQGGQAVN
HHHHHHHHHHCCEEECEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q
C
>Mature Secondary Structure 
GDPKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREI
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LSAPMEIRGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARS
HHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTSRIVKAKVTQQVNQGGQAVN
HHHHHHHHHHCCEEECEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA