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The map label for this gene is yjfR [C]

Identifier: 159041640

GI number: 159041640

Start: 1124180

End: 1124863

Strand: Reverse

Name: yjfR [C]

Synonym: Cmaq_1073

Alternate gene names: 159041640

Gene position: 1124863-1124180 (Counterclockwise)

Preceding gene: 159041641

Following gene: 159041635

Centisome position: 54.14

GC content: 48.1

Gene sequence:

>684_bases
ATGGGTTACTTGAAGTGGCTTGGGCATGCGGCCTTTGAAGTGGAATTAATGGGTAAGAGAATACTTATTGACCCATGGAT
ATCAAACCCCAATTCCCCAGTAACCCTAGGTGAGTTAAGTAAGGTAGACTTCATACTGGTGACCCATGATCACTCAGATC
ACTTGGGTGAGGCGGTTCAAATAGCCAATAAGACTAACGCCACGGTTGTATCAATATTCGAGCTAGCCGTTTACCTAGCC
GAGAAGGAGGGGGTTAAGAACACCATAGGTATGAACATTGGTGGACCCGTTAAATTAACTAACGAGATAGAGGTTTACAT
GACTCCAGCACTACACAGCTCAACCCATGGTTCACCAGTAGGCTTCGTAATTAAGTCCCCTGAGGCCGTTATTTATCACG
CCGGTGACACGGGTTTATTCAGTGACATGGAGTTGATAGGCAGATTATATAAGCCTGACGTGGCCCTACTACCCATAGGC
GGTTACTTCACAATGAGTCCACGGGAAGCGGCCTACGCAGTATCCCTAATAAACCCCAGGGCTGTGGTGCCAATGCACTA
CAACACCTTCCCCCAGATTAGGCAGGATCCTGAGGAATTCAGGAACCTAACCGAGTCCCTAGCCCCCCACGTGAGGGTTT
ACGTGATGAAGCCTGGAGATGTACTTAACCTGCCTATTAAGTGA

Upstream 100 bases:

>100_bases
TTGAGTTAATTACTTATGATTAAAACCAGGGCACTGTTAGGTAAATGCCCTAATATTCCTCAGGGGTTAACTTTTTAAGA
TGCGTTAAGCCTCTAGGATC

Downstream 100 bases:

>100_bases
AATAAGGAGCTTTTAATTTAAGGCTTAAATTAAAAATTAGTTTAAACAACCCTCCTCTTCTCAAGTATGCTATCTATCAA
CGTTACGGAGTAACCATCCT

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGYLKWLGHAAFEVELMGKRILIDPWISNPNSPVTLGELSKVDFILVTHDHSDHLGEAVQIANKTNATVVSIFELAVYLA
EKEGVKNTIGMNIGGPVKLTNEIEVYMTPALHSSTHGSPVGFVIKSPEAVIYHAGDTGLFSDMELIGRLYKPDVALLPIG
GYFTMSPREAAYAVSLINPRAVVPMHYNTFPQIRQDPEEFRNLTESLAPHVRVYVMKPGDVLNLPIK

Sequences:

>Translated_227_residues
MGYLKWLGHAAFEVELMGKRILIDPWISNPNSPVTLGELSKVDFILVTHDHSDHLGEAVQIANKTNATVVSIFELAVYLA
EKEGVKNTIGMNIGGPVKLTNEIEVYMTPALHSSTHGSPVGFVIKSPEAVIYHAGDTGLFSDMELIGRLYKPDVALLPIG
GYFTMSPREAAYAVSLINPRAVVPMHYNTFPQIRQDPEEFRNLTESLAPHVRVYVMKPGDVLNLPIK
>Mature_226_residues
GYLKWLGHAAFEVELMGKRILIDPWISNPNSPVTLGELSKVDFILVTHDHSDHLGEAVQIANKTNATVVSIFELAVYLAE
KEGVKNTIGMNIGGPVKLTNEIEVYMTPALHSSTHGSPVGFVIKSPEAVIYHAGDTGLFSDMELIGRLYKPDVALLPIGG
YFTMSPREAAYAVSLINPRAVVPMHYNTFPQIRQDPEEFRNLTESLAPHVRVYVMKPGDVLNLPIK

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family

Homologues:

Organism=Caenorhabditis elegans, GI17543104, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1073_CALMQ (A8MDP6)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540892.1
- ProteinModelPortal:   A8MDP6
- GeneID:   5710372
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_1073
- HOGENOM:   HBG741314
- OMA:   FPIIDQT
- ProtClustDB:   PRK00685
- BioCyc:   CMAQ397948:CMAQ_1073-MONOMER
- HAMAP:   MF_00457
- InterPro:   IPR001279
- InterPro:   IPR022877
- SMART:   SM00849

Pfam domain/function: PF00753 Lactamase_B

EC number: NA

Molecular weight: Translated: 25020; Mature: 24889

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYLKWLGHAAFEVELMGKRILIDPWISNPNSPVTLGELSKVDFILVTHDHSDHLGEAVQ
CCHHHHHCCCEEEEEEECCEEEEECCCCCCCCCEEECCCCCEEEEEEEECCCHHHHHHHE
IANKTNATVVSIFELAVYLAEKEGVKNTIGMNIGGPVKLTNEIEVYMTPALHSSTHGSPV
ECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCE
GFVIKSPEAVIYHAGDTGLFSDMELIGRLYKPDVALLPIGGYFTMSPREAAYAVSLINPR
EEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCCCEEEEEECCCC
AVVPMHYNTFPQIRQDPEEFRNLTESLAPHVRVYVMKPGDVLNLPIK
EEEEEECCCCCHHCCCHHHHHHHHHHCCCEEEEEEECCCCEEECCCC
>Mature Secondary Structure 
GYLKWLGHAAFEVELMGKRILIDPWISNPNSPVTLGELSKVDFILVTHDHSDHLGEAVQ
CHHHHHCCCEEEEEEECCEEEEECCCCCCCCCEEECCCCCEEEEEEEECCCHHHHHHHE
IANKTNATVVSIFELAVYLAEKEGVKNTIGMNIGGPVKLTNEIEVYMTPALHSSTHGSPV
ECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCE
GFVIKSPEAVIYHAGDTGLFSDMELIGRLYKPDVALLPIGGYFTMSPREAAYAVSLINPR
EEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCCCEEEEEECCCC
AVVPMHYNTFPQIRQDPEEFRNLTESLAPHVRVYVMKPGDVLNLPIK
EEEEEECCCCCHHCCCHHHHHHHHHHCCCEEEEEEECCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA