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The map label for this gene is rpl10e

Identifier: 159041538

GI number: 159041538

Start: 1017433

End: 1017960

Strand: Reverse

Name: rpl10e

Synonym: Cmaq_0968

Alternate gene names: 159041538

Gene position: 1017960-1017433 (Counterclockwise)

Preceding gene: 159041539

Following gene: 159041532

Centisome position: 49.0

GC content: 46.59

Gene sequence:

>528_bases
ATGCCATTAAGGCCTGCTAGGTGTTATAAAAGGATCAAGAGACCGTACACTAGGCTGAAGTATATTCACGGCGCCCCCTA
CGTCCAGATACCTAGGTTTGAGATGGGGGCCACTAAGGCTAAGGACAGGGAGAGGTTTACTTCAGTTGCAGTGCTTAGGG
TTCTTGAGGGTGGTCAAATTAGGGTTAATGCCCTTGAGGCTGCTAGGCAGATGGCCTATAAGTACTTATCTAAAGTCCTA
ACGGATCAAAACTTCTACCTGAAGATAATTAAGTACCCCCACCATGTTATTAGGGAGAATAAGATGTTAGCTATGGCTGG
TGCCGACCGTTTACAGGAAGGTATGAGGCTTGCCTTCGGTGTACCCACTGGTAGGGCTATTCAGATTGAGCCTGGGGAGG
TTTTAATGATTGTTGAGGTTGAGGATAGGAATATTACCCACGCTAAGGAGGCGTTGAATAGGGCTAGGGCTAAGTTACCG
TTACCCTGTAGGATTGAGTTAACGAGGAAGTCAGTAATCAAAGGCTAA

Upstream 100 bases:

>100_bases
TTACTATGGTGGTTGAAAATTAAAGGATATTACAGTTATGTTATTGGATTACTGGGATTATTGAGTATAGTTTTAAAGGG
GTACTGGGCAGTGGTTGCTT

Downstream 100 bases:

>100_bases
TTCACCACTCATAATCGAGCTGCTTCATCACTAATCCTAACTAAGCACGTATTGGGTTAAAAAAAGTATCCCTGCTCATG
GATAATGAGGATTTAGATAT

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MPLRPARCYKRIKRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVL
TDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP
LPCRIELTRKSVIKG

Sequences:

>Translated_175_residues
MPLRPARCYKRIKRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVL
TDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP
LPCRIELTRKSVIKG
>Mature_174_residues
PLRPARCYKRIKRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLT
DQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPL
PCRIELTRKSVIKG

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI223890243, Length=171, Percent_Identity=41.5204678362573, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI18152783, Length=171, Percent_Identity=41.5204678362573, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17533037, Length=161, Percent_Identity=40.3726708074534, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6323104, Length=171, Percent_Identity=40.9356725146199, Blast_Score=113, Evalue=2e-26,
Organism=Drosophila melanogaster, GI221513696, Length=171, Percent_Identity=40.9356725146199, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI221513692, Length=171, Percent_Identity=40.9356725146199, Blast_Score=111, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_CALMQ (A8MDE4)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540790.1
- ProteinModelPortal:   A8MDE4
- SMR:   A8MDE4
- GeneID:   5708590
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0968
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- ProtClustDB:   PRK04199
- BioCyc:   CMAQ397948:CMAQ_0968-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 20114; Mature: 19983

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRPARCYKRIKRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQI
CCCCHHHHHHHHHCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
RVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFG
EEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCEEEECCHHHHHHCCEEEEE
VPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRKSVIKG
CCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECHHHHCCC
>Mature Secondary Structure 
PLRPARCYKRIKRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQI
CCCHHHHHHHHHCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
RVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFG
EEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCEEEECCHHHHHHCCEEEEE
VPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRKSVIKG
CCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA