| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041539
Identifier: 159041539
GI number: 159041539
Start: 1018045
End: 1019949
Strand: Reverse
Name: 159041539
Synonym: Cmaq_0969
Alternate gene names: NA
Gene position: 1019949-1018045 (Counterclockwise)
Preceding gene: 159041549
Following gene: 159041538
Centisome position: 49.09
GC content: 45.14
Gene sequence:
>1905_bases ATGGGTGTCTTTATTGTTGATACCTCTAGAAGCCCCTATGCCAAGTTAAGACCAGTCTCGATGAGTGATGTTAAGCTCAC TGATGGCTTCTGGTCACCTAGGTTGGATAAATTAGTTAATGTAACATTACCTACAATGTATAATCTTCTTGAGGAAACTG GGCGGATTGATAATTTCAGGGTAGTTTCCGGCAGGGTTAAGGGTGGTTTTAGGGGCATACTCTTCAATGATTCTGACGTC TATAAGTGGATTGAAGCCACTGCATGGGCCTTGGTTAATAGGCGTAATGATCAATTAATTAAGGTGCTTAATGATGTCGT TGATATTGTTGCGGAGGCTCAATTGCCTGACGGCTACATTAACACCTACTTCTACCATAGGTTAGGGGAGAGGTATAGGT ACCTTAGGCAATCCCATGAACTATACTGCGCAGGTCACTTAATTCAAGCGGCAGTTGCCTGTAGGAGGAGTGGCGTATGT GTAAGGTTGTATAATGTGGCGTTGAGATTAGGCAACCACATTGTTGATGTCATTAACCCCAGTGGCCTATTGGCGGTTGA TGGTCATCCAGAGGTCGAAATGGCCATGGTTGAGTTATACAGGGAGTCGGGGGATAAGAGGTTCCTGGAGGAGGCTGTTT TTCAGATAGAGAGTAGGGGGAGGGGTGTTTTGAGGAATTTTAGAATGCCTGGGTCATGGGATGCAGGTGATGAGTACTTC ATAGACCATAAACCGCTTAAGGATTTACGTGAAGTACCAACTGGTGTTCATGCGGTTAGGTTCCTATACCTCATGTCTGG TGCAACCGACGTCGTCATGGAGACTGGGGATAAGGCACTGTGGGAGGCTTTAAGTAACCTTTGGGTTGACTTAACAGGCA CTAGAATGTACGTTACCGGTGGTGTTGGTTCTAGGCATGAGGGTGAGGCAATAGGTGAACCATATGAGTTACCTAATGAT AGGGCTTACTCAGAAACATGCGCCGCAGTGGCTAATGTAATGTGGAATTACAGGATGCTGCTGGCCACTGGTGATGCTAA GTACGCGGATATTATGGAGTTAGCCCTATATAATGCTGCGTTAGCAGGAATATCACTGGATGGTAAATCATACTTCTACG TTAATCCATTGGCAAACAGGGGTTGGCATAGGAGGCAGCCTTGGTTTGATGTAGCATGCTGCCCACCTAATATTGCAAGG CTAATCGCATCACTACCAGGCTACATATACTCAACATCCAGTGACGGTGTATGGATTCACCTCTACATAGCTTCAGAGGC CAAGGTTAACCTTAACGGTGGTATTGTGGAGCTTAAGGTTAATACAGATTACCCATGGGATGGGGAAGTTAAGGTTACCG TTAACCCAAGTAAGGAGGATGAATTCACAATATACTTAAGGATACCTGGCTGGAGCCGTGGAGGTAAGTTACTTATCAAT GGTGTCGAGCAAGGTGTTGAATTAAAGCCATCAACGTACTTAGGGGTTAAGAGGACTTGGAGGAGTGGGGATGAAGTTAT CCTAAGGATACCTATGTCCATTGAGCTTATTGCCTCCCATCCACACGTATTAGCTAATACGGCTAGGGTTGCTATTAAGA GGGGCCCATTGGTGTATTGCCTTGAGCAAGTTGATAACCCGGGTGTTGATGTATGGGATATTGTCCTTAAACGCACCTGC CGTCTTGAGGCTAAGTACGTTGAGAATTTGCTTAATGGTGTAGTTGTGATTGAGGGTGAGGCCTATGAGTTGAGAAGTCA AGGTGAATTGTATAAGTCACTTAATGACATTAGGCTTAGTTTAAGGTCCATTAAGTTTAGGGCTATACCGTATTACGCAT GGGCCAATAGAGACCCAGGGCCCATGACTGTTTGGGTACCATTAATCGATTACTATGGTGGTTGA
Upstream 100 bases:
>100_bases GGAATCCCCTATATTAAAGATTAACATTACATATTTTAATTTTGTATACTAATAAACACCCACCCACAATACTTTAATAC CTTAAGTAACATGTATTATA
Downstream 100 bases:
>100_bases AAATTAAAGGATATTACAGTTATGTTATTGGATTACTGGGATTATTGAGTATAGTTTTAAAGGGGTACTGGGCAGTGGTT GCTTATGCCATTAAGGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MGVFIVDTSRSPYAKLRPVSMSDVKLTDGFWSPRLDKLVNVTLPTMYNLLEETGRIDNFRVVSGRVKGGFRGILFNDSDV YKWIEATAWALVNRRNDQLIKVLNDVVDIVAEAQLPDGYINTYFYHRLGERYRYLRQSHELYCAGHLIQAAVACRRSGVC VRLYNVALRLGNHIVDVINPSGLLAVDGHPEVEMAMVELYRESGDKRFLEEAVFQIESRGRGVLRNFRMPGSWDAGDEYF IDHKPLKDLREVPTGVHAVRFLYLMSGATDVVMETGDKALWEALSNLWVDLTGTRMYVTGGVGSRHEGEAIGEPYELPND RAYSETCAAVANVMWNYRMLLATGDAKYADIMELALYNAALAGISLDGKSYFYVNPLANRGWHRRQPWFDVACCPPNIAR LIASLPGYIYSTSSDGVWIHLYIASEAKVNLNGGIVELKVNTDYPWDGEVKVTVNPSKEDEFTIYLRIPGWSRGGKLLIN GVEQGVELKPSTYLGVKRTWRSGDEVILRIPMSIELIASHPHVLANTARVAIKRGPLVYCLEQVDNPGVDVWDIVLKRTC RLEAKYVENLLNGVVVIEGEAYELRSQGELYKSLNDIRLSLRSIKFRAIPYYAWANRDPGPMTVWVPLIDYYGG
Sequences:
>Translated_634_residues MGVFIVDTSRSPYAKLRPVSMSDVKLTDGFWSPRLDKLVNVTLPTMYNLLEETGRIDNFRVVSGRVKGGFRGILFNDSDV YKWIEATAWALVNRRNDQLIKVLNDVVDIVAEAQLPDGYINTYFYHRLGERYRYLRQSHELYCAGHLIQAAVACRRSGVC VRLYNVALRLGNHIVDVINPSGLLAVDGHPEVEMAMVELYRESGDKRFLEEAVFQIESRGRGVLRNFRMPGSWDAGDEYF IDHKPLKDLREVPTGVHAVRFLYLMSGATDVVMETGDKALWEALSNLWVDLTGTRMYVTGGVGSRHEGEAIGEPYELPND RAYSETCAAVANVMWNYRMLLATGDAKYADIMELALYNAALAGISLDGKSYFYVNPLANRGWHRRQPWFDVACCPPNIAR LIASLPGYIYSTSSDGVWIHLYIASEAKVNLNGGIVELKVNTDYPWDGEVKVTVNPSKEDEFTIYLRIPGWSRGGKLLIN GVEQGVELKPSTYLGVKRTWRSGDEVILRIPMSIELIASHPHVLANTARVAIKRGPLVYCLEQVDNPGVDVWDIVLKRTC RLEAKYVENLLNGVVVIEGEAYELRSQGELYKSLNDIRLSLRSIKFRAIPYYAWANRDPGPMTVWVPLIDYYGG >Mature_633_residues GVFIVDTSRSPYAKLRPVSMSDVKLTDGFWSPRLDKLVNVTLPTMYNLLEETGRIDNFRVVSGRVKGGFRGILFNDSDVY KWIEATAWALVNRRNDQLIKVLNDVVDIVAEAQLPDGYINTYFYHRLGERYRYLRQSHELYCAGHLIQAAVACRRSGVCV RLYNVALRLGNHIVDVINPSGLLAVDGHPEVEMAMVELYRESGDKRFLEEAVFQIESRGRGVLRNFRMPGSWDAGDEYFI DHKPLKDLREVPTGVHAVRFLYLMSGATDVVMETGDKALWEALSNLWVDLTGTRMYVTGGVGSRHEGEAIGEPYELPNDR AYSETCAAVANVMWNYRMLLATGDAKYADIMELALYNAALAGISLDGKSYFYVNPLANRGWHRRQPWFDVACCPPNIARL IASLPGYIYSTSSDGVWIHLYIASEAKVNLNGGIVELKVNTDYPWDGEVKVTVNPSKEDEFTIYLRIPGWSRGGKLLING VEQGVELKPSTYLGVKRTWRSGDEVILRIPMSIELIASHPHVLANTARVAIKRGPLVYCLEQVDNPGVDVWDIVLKRTCR LEAKYVENLLNGVVVIEGEAYELRSQGELYKSLNDIRLSLRSIKFRAIPYYAWANRDPGPMTVWVPLIDYYGG
Specific function: Unknown
COG id: COG3533
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71528; Mature: 71397
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFIVDTSRSPYAKLRPVSMSDVKLTDGFWSPRLDKLVNVTLPTMYNLLEETGRIDNFR CCEEEEECCCCCCHHCCCCCCCCEEEECCCCCCCHHHHHEEHHHHHHHHHHHHCCCCCEE VVSGRVKGGFRGILFNDSDVYKWIEATAWALVNRRNDQLIKVLNDVVDIVAEAQLPDGYI EEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHH NTYFYHRLGERYRYLRQSHELYCAGHLIQAAVACRRSGVCVRLYNVALRLGNHIVDVINP HHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEEECC SGLLAVDGHPEVEMAMVELYRESGDKRFLEEAVFQIESRGRGVLRNFRMPGSWDAGDEYF CCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEE IDHKPLKDLREVPTGVHAVRFLYLMSGATDVVMETGDKALWEALSNLWVDLTGTRMYVTG ECCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCEEEEECCEEEEEC GVGSRHEGEAIGEPYELPNDRAYSETCAAVANVMWNYRMLLATGDAKYADIMELALYNAA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHH LAGISLDGKSYFYVNPLANRGWHRRQPWFDVACCPPNIARLIASLPGYIYSTSSDGVWIH HEEEEECCCEEEEECCHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCEEEE LYIASEAKVNLNGGIVELKVNTDYPWDGEVKVTVNPSKEDEFTIYLRIPGWSRGGKLLIN EEEECCCEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEEE GVEQGVELKPSTYLGVKRTWRSGDEVILRIPMSIELIASHPHVLANTARVAIKRGPLVYC ECCCCCEECCCEEECCCHHCCCCCEEEEECCCEEEEEECCCCCHHCCCEEEEECCCEEEE LEQVDNPGVDVWDIVLKRTCRLEAKYVENLLNGVVVIEGEAYELRSQGELYKSLNDIRLS EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCHHHHCCCHHHHHHHHHHHHH LRSIKFRAIPYYAWANRDPGPMTVWVPLIDYYGG HHHEEEEEEEEEEECCCCCCCEEEEEEEHHCCCC >Mature Secondary Structure GVFIVDTSRSPYAKLRPVSMSDVKLTDGFWSPRLDKLVNVTLPTMYNLLEETGRIDNFR CEEEEECCCCCCHHCCCCCCCCEEEECCCCCCCHHHHHEEHHHHHHHHHHHHCCCCCEE VVSGRVKGGFRGILFNDSDVYKWIEATAWALVNRRNDQLIKVLNDVVDIVAEAQLPDGYI EEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHH NTYFYHRLGERYRYLRQSHELYCAGHLIQAAVACRRSGVCVRLYNVALRLGNHIVDVINP HHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEEECC SGLLAVDGHPEVEMAMVELYRESGDKRFLEEAVFQIESRGRGVLRNFRMPGSWDAGDEYF CCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEE IDHKPLKDLREVPTGVHAVRFLYLMSGATDVVMETGDKALWEALSNLWVDLTGTRMYVTG ECCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCEEEEECCEEEEEC GVGSRHEGEAIGEPYELPNDRAYSETCAAVANVMWNYRMLLATGDAKYADIMELALYNAA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHH LAGISLDGKSYFYVNPLANRGWHRRQPWFDVACCPPNIARLIASLPGYIYSTSSDGVWIH HEEEEECCCEEEEECCHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCEEEE LYIASEAKVNLNGGIVELKVNTDYPWDGEVKVTVNPSKEDEFTIYLRIPGWSRGGKLLIN EEEECCCEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEEE GVEQGVELKPSTYLGVKRTWRSGDEVILRIPMSIELIASHPHVLANTARVAIKRGPLVYC ECCCCCEECCCEEECCCHHCCCCCEEEEECCCEEEEEECCCCCHHCCCEEEEECCCEEEE LEQVDNPGVDVWDIVLKRTCRLEAKYVENLLNGVVVIEGEAYELRSQGELYKSLNDIRLS EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCHHHHCCCHHHHHHHHHHHHH LRSIKFRAIPYYAWANRDPGPMTVWVPLIDYYGG HHHEEEEEEEEEEECCCCCCCEEEEEEEHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA