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The map label for this gene is xylA [H]

Identifier: 159041282

GI number: 159041282

Start: 742068

End: 743183

Strand: Reverse

Name: xylA [H]

Synonym: Cmaq_0708

Alternate gene names: 159041282

Gene position: 743183-742068 (Counterclockwise)

Preceding gene: 159041283

Following gene: 159041280

Centisome position: 35.77

GC content: 43.46

Gene sequence:

>1116_bases
ATGAGCATGAGTATAAGTAGGTTAAAGTCAACCTACTCAGGTTTCATAGAGGGTAAGACTGTTGATCAATTTTTCAGTGA
GTATAATGTTAAGTTCGCTGCAGGTACATGGACTGCTGGGGATTTCTCAGATAGATTCAATAGAAGTGGTTACTTCCCGA
ATCTACCAAGAGGGTTAGTGGATCAGTTAAGGAGGGTGAGGGAGTCTGGGATTGAGGGTGTCGTGCCAATAGATGCTCAA
TTCCTTGACGATAATCTTAAGGTTAAGGAGGACTTGATAAATGAAGTTAAGGCAACTGCAAGTGAATTAGGCCTTAAGAT
AGCTGGGTTAGGTATGGATATTTCAGGTTTCCACGTGTTTAAACTAGGTTCATTAACTAACCCTGACCCTAAGGTGAGGG
AACTGGCCTTAAGCACCCTTACCCAGAGCCTTGAAATAGCCCGTATGCTTGGCCTGGATTCAGTATCACTTTGGCTTGGT
CCAGATGGCTGGGATTACAGTCTTGAGTCTAATTACGGTAAGAAGATTAAGGAACTTTACGAGGGGTTACTTACCCTAGG
TAAGGAGGCGCATAGGTTGGGCATTAGGTCTTTTGGACTTGAGGCTAAGCCCAAGGAGCCTAGGGAGGGTAATTTAATCA
TACCCACATCCCATGTTTCAATAATGCTCGCTAACAGGCTAAATAATGATTTAGGTGTAAAACTGTTTGGAATAACCATA
GACTATGGTCATGAATTAATGTACGCCGTTGAACCAGCCTACACAGTCTACTTAGCTAAGGAGCAGGGAGTCTCAGTGGC
CACGGTGCATATTAATACAGCTAAGTGGCATAGTAATGATGAGGACAGGGTTGTTGGAACTGGGGACGCATGGCACTTCG
TAGACTTCCTATACGCACTACTGGACACTGGTTACTCAGGCTGGTTTACCCTGGATCAATTCACTTATAGGCTTAATCCA
GTGGATGGGTTAAGGTTATCTAAGGAATTATTCGCTAACCTGTATAAGAAGGCTCTGGCACTATACTTATCTAGGGATGA
GTTTGAGAACATTAGGTCCACGGGTGATCAAGCTAAGATACTTGACTACGTTAAGAGGATAATGTACGGCTTATGA

Upstream 100 bases:

>100_bases
ATTTATACTCAATATTCGTGACTAGACTTAACCTACCCTAACCTGTTTAATGATTAATGATGGCTATAACTTAAAAGTAA
ACTAATGCTTAATTCAGTTA

Downstream 100 bases:

>100_bases
GCGTTGAGTTAATGATACTATATCTTAAATATGTACGTGTTCTTTAATGCATTCCAAGTAGCCATTGCGAAGTTAAGGGT
TGTCCTTGTTTCACCAAGGG

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSMSISRLKSTYSGFIEGKTVDQFFSEYNVKFAAGTWTAGDFSDRFNRSGYFPNLPRGLVDQLRRVRESGIEGVVPIDAQ
FLDDNLKVKEDLINEVKATASELGLKIAGLGMDISGFHVFKLGSLTNPDPKVRELALSTLTQSLEIARMLGLDSVSLWLG
PDGWDYSLESNYGKKIKELYEGLLTLGKEAHRLGIRSFGLEAKPKEPREGNLIIPTSHVSIMLANRLNNDLGVKLFGITI
DYGHELMYAVEPAYTVYLAKEQGVSVATVHINTAKWHSNDEDRVVGTGDAWHFVDFLYALLDTGYSGWFTLDQFTYRLNP
VDGLRLSKELFANLYKKALALYLSRDEFENIRSTGDQAKILDYVKRIMYGL

Sequences:

>Translated_371_residues
MSMSISRLKSTYSGFIEGKTVDQFFSEYNVKFAAGTWTAGDFSDRFNRSGYFPNLPRGLVDQLRRVRESGIEGVVPIDAQ
FLDDNLKVKEDLINEVKATASELGLKIAGLGMDISGFHVFKLGSLTNPDPKVRELALSTLTQSLEIARMLGLDSVSLWLG
PDGWDYSLESNYGKKIKELYEGLLTLGKEAHRLGIRSFGLEAKPKEPREGNLIIPTSHVSIMLANRLNNDLGVKLFGITI
DYGHELMYAVEPAYTVYLAKEQGVSVATVHINTAKWHSNDEDRVVGTGDAWHFVDFLYALLDTGYSGWFTLDQFTYRLNP
VDGLRLSKELFANLYKKALALYLSRDEFENIRSTGDQAKILDYVKRIMYGL
>Mature_370_residues
SMSISRLKSTYSGFIEGKTVDQFFSEYNVKFAAGTWTAGDFSDRFNRSGYFPNLPRGLVDQLRRVRESGIEGVVPIDAQF
LDDNLKVKEDLINEVKATASELGLKIAGLGMDISGFHVFKLGSLTNPDPKVRELALSTLTQSLEIARMLGLDSVSLWLGP
DGWDYSLESNYGKKIKELYEGLLTLGKEAHRLGIRSFGLEAKPKEPREGNLIIPTSHVSIMLANRLNNDLGVKLFGITID
YGHELMYAVEPAYTVYLAKEQGVSVATVHINTAKWHSNDEDRVVGTGDAWHFVDFLYALLDTGYSGWFTLDQFTYRLNPV
DGLRLSKELFANLYKKALALYLSRDEFENIRSTGDQAKILDYVKRIMYGL

Specific function: Unknown

COG id: COG4952

COG function: function code M; Predicted sugar isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013453
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 41642; Mature: 41511

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSISRLKSTYSGFIEGKTVDQFFSEYNVKFAAGTWTAGDFSDRFNRSGYFPNLPRGLV
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCHHHCCCCCCCCCCCHHHH
DQLRRVRESGIEGVVPIDAQFLDDNLKVKEDLINEVKATASELGLKIAGLGMDISGFHVF
HHHHHHHHCCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEE
KLGSLTNPDPKVRELALSTLTQSLEIARMLGLDSVSLWLGPDGWDYSLESNYGKKIKELY
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
EGLLTLGKEAHRLGIRSFGLEAKPKEPREGNLIIPTSHVSIMLANRLNNDLGVKLFGITI
HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEHHCCCCCCEEEEEEEE
DYGHELMYAVEPAYTVYLAKEQGVSVATVHINTAKWHSNDEDRVVGTGDAWHFVDFLYAL
ECCCEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH
LDTGYSGWFTLDQFTYRLNPVDGLRLSKELFANLYKKALALYLSRDEFENIRSTGDQAKI
HHCCCCCEEEEEHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LDYVKRIMYGL
HHHHHHHHHCC
>Mature Secondary Structure 
SMSISRLKSTYSGFIEGKTVDQFFSEYNVKFAAGTWTAGDFSDRFNRSGYFPNLPRGLV
CCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCHHHCCCCCCCCCCCHHHH
DQLRRVRESGIEGVVPIDAQFLDDNLKVKEDLINEVKATASELGLKIAGLGMDISGFHVF
HHHHHHHHCCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEE
KLGSLTNPDPKVRELALSTLTQSLEIARMLGLDSVSLWLGPDGWDYSLESNYGKKIKELY
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
EGLLTLGKEAHRLGIRSFGLEAKPKEPREGNLIIPTSHVSIMLANRLNNDLGVKLFGITI
HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEHHCCCCCCEEEEEEEE
DYGHELMYAVEPAYTVYLAKEQGVSVATVHINTAKWHSNDEDRVVGTGDAWHFVDFLYAL
ECCCEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH
LDTGYSGWFTLDQFTYRLNPVDGLRLSKELFANLYKKALALYLSRDEFENIRSTGDQAKI
HHCCCCCEEEEEHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LDYVKRIMYGL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2798103; 3237716; 1610791; 10089406; 1610792; 1610793 [H]