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The map label for this gene is dppB [H]

Identifier: 15899753

GI number: 15899753

Start: 2799228

End: 2800256

Strand: Reverse

Name: dppB [H]

Synonym: SSO3048

Alternate gene names: 15899753

Gene position: 2800256-2799228 (Counterclockwise)

Preceding gene: 15899756

Following gene: 15899752

Centisome position: 93.58

GC content: 35.28

Gene sequence:

>1029_bases
GTGAGACGAGATTTCTTGATCAAAAGGGGTATATATTACATCATAGTTTGGTTTGTTGGAATTACAATAGATTTTATCCT
TCCTAGGCTAATACCTGGTAGTGCATTGGCAAGCATAATTTATAGTAGAATTGGTGGAGCTGGATCCAATTATGGGCAAA
ATGTTCAACAAGAGATTCAAATTCTTGTTCAGCAATTAGGTTTAGCTCAGTATCAACAACCTCTTTATATTCAGTATTTT
AATTACTTAAAAGAAATAGTTACACTGAATTTCGGTGTTTCTCTTACCGAATTTCCAGTATCTGTAAGCACAATAATAAC
TGAAGCTGCTCCTTGGACTTTTGGTATAGTAATACCAGCTATTGTAGCCTCTTTCTTCATAGGTAATTTGCTTGGCAGAG
TGGCTGCTTTGTCAAGAGGTAAAATAAGTGACTACGCCATATTGGGACTCATGATGTTTTTATATACGTTTCCTGTTTTT
GTTACTGGGGAGATTTTAATAGAAGTACTAGCAATTGATCTTCACATATTCCCTACAGGTGGGCAGTATAATACCTTTCA
ATTTCTCAAACCTACTATGAGTTTGCCCTTTATTTGGTCCGTAATATATCATGCAATATTACCCACATTAACACTAATTC
TCTTTTCCCTAGCAGGATGGATAATGGGAATGAGAAATAATATGATACCCATTTTACAAGAGGATTATATGAATTATTAT
AGGTTAATGGGAGTATCAGAAAAAATGGTTGCAAGTAAGGCCTATAGGTTAGCATTATTACCTAACTTTACCAGTTTCTC
CATTTCCTTAGGATACTCTGTATTGGGTGCTGTTGCGATAGAGTATTTATTTAACTATGCAGGTTTAGGCTACTTCTTTA
ATCAAGCCATTACCGGTTTGGATTACCCGTTACTAAGCGGAATATTTTTCATGTTAGTTACTGCGATGGTATTAAGTAAT
TTCGTCGCAGACATAATTTACACAATAATAGATCCTAGGACAAGTCAAGAGGAGACGGAGGGTGTATAA

Upstream 100 bases:

>100_bases
AAATGAATACTTTATATGATTTATTCTAAATTAACAAAATTGTTGTTGATACTCATAATTTATATATCTCTATTTCAAAG
ATTCTAATAGTGGGTCTCTA

Downstream 100 bases:

>100_bases
GATGGCCAGCAGAAAGTTAAATACTTTTAATTTAAAAATAGATAAGTACGGTCCGGTTTATAATCTAATAAGAGGTGTGT
GGGAACAAAGAGTATCAAGA

Product: ABC transporter, permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQILVQQLGLAQYQQPLYIQYF
NYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVF
VTGEILIEVLAIDLHIFPTGGQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY
RLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDYPLLSGIFFMLVTAMVLSN
FVADIIYTIIDPRTSQEETEGV

Sequences:

>Translated_342_residues
MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQILVQQLGLAQYQQPLYIQYF
NYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVF
VTGEILIEVLAIDLHIFPTGGQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY
RLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDYPLLSGIFFMLVTAMVLSN
FVADIIYTIIDPRTSQEETEGV
>Mature_342_residues
MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQILVQQLGLAQYQQPLYIQYF
NYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVF
VTGEILIEVLAIDLHIFPTGGQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY
RLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDYPLLSGIFFMLVTAMVLSN
FVADIIYTIIDPRTSQEETEGV

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=351, Percent_Identity=26.4957264957265, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787053, Length=330, Percent_Identity=28.1818181818182, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=25.4491017964072, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789888, Length=288, Percent_Identity=25.3472222222222, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788504, Length=370, Percent_Identity=25.9459459459459, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=28.955223880597, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=23.3812949640288, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38385; Mature: 38385

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ILVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHH
IVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGL
HHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPRTSQEETEGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ILVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHH
IVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
GQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGL
HHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPRTSQEETEGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]