Click here to switch to the map view.

The map label for this gene is acd-4 [H]

Identifier: 15899249

GI number: 15899249

Start: 2280182

End: 2281294

Strand: Direct

Name: acd-4 [H]

Synonym: SSO2511

Alternate gene names: 15899249

Gene position: 2280182-2281294 (Clockwise)

Preceding gene: 15899248

Following gene: 15899252

Centisome position: 76.2

GC content: 41.51

Gene sequence:

>1113_bases
ATGAGTAAAAATGAGGATGAATTAGAAGAGTACAGAATAAAGGTGAGGGAGTGGATAAGGAATAATGTACCGGAGGAGAT
AAGGGCTAAAGGAGACATGGCCCCTCCAGATGTCTTAAGAGAGTGGCAGAGAAGAATATATGAGGCTGGATATTTGGGGG
TATCTTGGCCAAAGGAATATGGGGGGTGGGGAGAGAATCCAATTAAGGAGATAATAGTTAGGGAAGAGTTCGCTAAAGCG
GGAGTGCCTTATGCCACAGTTGGTTTAGGGGTATCGGTAGTCGGTCCTGCAATTATTCTTAACGGTACTGAAGAGCAGAA
GAAGAAACATATAAGGAGAATATTAACAGCTGAGGACGTGTGGTGTCAAGGTTTCTCAGAACCACAAGCTGGATCAGATT
TAGCGGGAATAAAGACAAAGGCCGAAGATAAGGGGGAGTACTTTCTAGTTAATGGACAGAAAATATGGAGCAGTTATGCA
CATTTGGCAAACTATTGCCTTCTCCTGACTAGAACCGGCGATGTATCGGAGAGACATAAGGGGCTTACCATGCTTATAGT
TGATATGAAAAGCGAGGGAATAAGGGTAAGTCCAATCAAGCAAATTACTGGGAGATCAGAATTTAACACAGTGTATTTTA
ATAACGTAAAGGTTCCCAAGGAGAATGTGGTGGGTAAGATCGGTGAAGGTTGGAAAGTAGCGATGTCCACATTAAATTAT
GAGAGGCTTAACATAGGAACAATATTGTTTACAGTAGAGAGGCTCATTAGGGAATTATCTATCAATAACGATCAACTATT
CAATACTGCAGAGGAAATTGTAGCGTTAAAGTCATTTTATAAGAGGATATTGGAAAGACTCAAGAAGGGGTATATTGCGG
GTCCAGAAGCTGCAGTAATAAAGTTGGTAGCTTCAGAAGCCATACAGAGAGTTTACGAAAACGCAATGGCTAATATGGGG
ATAGAAGGACTAGTTATGGAGCGAGAACCTGGATTTAGGCCAGAAATAGCATATGGTTTCTTAGCCTCTAGGTCCATAAC
AATAGCTGGCGGTACTTCAGAGATATTAAGGAATTTATTGGGAGAGGTTGTTCTAGGATTGCCAAAAGGCTAA

Upstream 100 bases:

>100_bases
TAGGGAAATTCGATAAGAAGGTTTTAAGGGAAAAATATAGAGATTTCTTTATTAGCAGTAGATAAGAAAATATTTAAAGT
AATAAGGAGGTATTAAAAGT

Downstream 100 bases:

>100_bases
ATAAAAGGGAAAAAACTTTATTCTCCTTTAAATTGGGGTTTTCTTTTTTCTAAGAAAGCTTTCACTCCTTCTTCTACATC
TTTAGTTGTGAATAAAAGCC

Product: Acyl-CoA dehydrogenase (acd-4)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSKNEDELEEYRIKVREWIRNNVPEEIRAKGDMAPPDVLREWQRRIYEAGYLGVSWPKEYGGWGENPIKEIIVREEFAKA
GVPYATVGLGVSVVGPAIILNGTEEQKKKHIRRILTAEDVWCQGFSEPQAGSDLAGIKTKAEDKGEYFLVNGQKIWSSYA
HLANYCLLLTRTGDVSERHKGLTMLIVDMKSEGIRVSPIKQITGRSEFNTVYFNNVKVPKENVVGKIGEGWKVAMSTLNY
ERLNIGTILFTVERLIRELSINNDQLFNTAEEIVALKSFYKRILERLKKGYIAGPEAAVIKLVASEAIQRVYENAMANMG
IEGLVMEREPGFRPEIAYGFLASRSITIAGGTSEILRNLLGEVVLGLPKG

Sequences:

>Translated_370_residues
MSKNEDELEEYRIKVREWIRNNVPEEIRAKGDMAPPDVLREWQRRIYEAGYLGVSWPKEYGGWGENPIKEIIVREEFAKA
GVPYATVGLGVSVVGPAIILNGTEEQKKKHIRRILTAEDVWCQGFSEPQAGSDLAGIKTKAEDKGEYFLVNGQKIWSSYA
HLANYCLLLTRTGDVSERHKGLTMLIVDMKSEGIRVSPIKQITGRSEFNTVYFNNVKVPKENVVGKIGEGWKVAMSTLNY
ERLNIGTILFTVERLIRELSINNDQLFNTAEEIVALKSFYKRILERLKKGYIAGPEAAVIKLVASEAIQRVYENAMANMG
IEGLVMEREPGFRPEIAYGFLASRSITIAGGTSEILRNLLGEVVLGLPKG
>Mature_369_residues
SKNEDELEEYRIKVREWIRNNVPEEIRAKGDMAPPDVLREWQRRIYEAGYLGVSWPKEYGGWGENPIKEIIVREEFAKAG
VPYATVGLGVSVVGPAIILNGTEEQKKKHIRRILTAEDVWCQGFSEPQAGSDLAGIKTKAEDKGEYFLVNGQKIWSSYAH
LANYCLLLTRTGDVSERHKGLTMLIVDMKSEGIRVSPIKQITGRSEFNTVYFNNVKVPKENVVGKIGEGWKVAMSTLNYE
RLNIGTILFTVERLIRELSINNDQLFNTAEEIVALKSFYKRILERLKKGYIAGPEAAVIKLVASEAIQRVYENAMANMGI
EGLVMEREPGFRPEIAYGFLASRSITIAGGTSEILRNLLGEVVLGLPKG

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI187960098, Length=245, Percent_Identity=33.469387755102, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4557231, Length=245, Percent_Identity=33.469387755102, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI21361497, Length=351, Percent_Identity=30.4843304843305, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI4501859, Length=204, Percent_Identity=33.8235294117647, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI226958412, Length=347, Percent_Identity=25.0720461095101, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI226958414, Length=346, Percent_Identity=24.5664739884393, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4557233, Length=336, Percent_Identity=28.2738095238095, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI4557235, Length=353, Percent_Identity=29.4617563739377, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI76496475, Length=353, Percent_Identity=29.4617563739377, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI4501857, Length=351, Percent_Identity=23.6467236467236, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI7656849, Length=252, Percent_Identity=25.7936507936508, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI211971008, Length=295, Percent_Identity=24.406779661017, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI48976061, Length=295, Percent_Identity=24.406779661017, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI38505218, Length=288, Percent_Identity=25.3472222222222, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081958, Length=382, Percent_Identity=25.6544502617801, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786223, Length=329, Percent_Identity=22.4924012158055, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538396, Length=384, Percent_Identity=26.3020833333333, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17508101, Length=341, Percent_Identity=30.4985337243402, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17570075, Length=351, Percent_Identity=27.6353276353276, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=205, Percent_Identity=35.609756097561, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17534899, Length=397, Percent_Identity=26.448362720403, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI32563615, Length=199, Percent_Identity=35.678391959799, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=211, Percent_Identity=30.3317535545024, Blast_Score=104, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71985184, Length=353, Percent_Identity=27.1954674220963, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71990804, Length=207, Percent_Identity=32.8502415458937, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71985192, Length=247, Percent_Identity=31.1740890688259, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71982178, Length=250, Percent_Identity=28.8, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17505929, Length=217, Percent_Identity=27.1889400921659, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551932, Length=217, Percent_Identity=27.1889400921659, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17533517, Length=231, Percent_Identity=26.8398268398268, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17531909, Length=113, Percent_Identity=33.6283185840708, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17534353, Length=204, Percent_Identity=26.9607843137255, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21355753, Length=383, Percent_Identity=26.8929503916449, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21356377, Length=352, Percent_Identity=29.8295454545455, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24666513, Length=288, Percent_Identity=29.8611111111111, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI281363737, Length=354, Percent_Identity=28.8135593220339, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24660351, Length=254, Percent_Identity=32.2834645669291, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24646207, Length=346, Percent_Identity=26.5895953757225, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI19920834, Length=253, Percent_Identity=26.4822134387352, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41512; Mature: 41381

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNEDELEEYRIKVREWIRNNVPEEIRAKGDMAPPDVLREWQRRIYEAGYLGVSWPKEY
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
GGWGENPIKEIIVREEFAKAGVPYATVGLGVSVVGPAIILNGTEEQKKKHIRRILTAEDV
CCCCCCHHHHHHHHHHHHHCCCCEEHHHCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHH
WCQGFSEPQAGSDLAGIKTKAEDKGEYFLVNGQKIWSSYAHLANYCLLLTRTGDVSERHK
HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHEEEEECCCCHHHHHC
GLTMLIVDMKSEGIRVSPIKQITGRSEFNTVYFNNVKVPKENVVGKIGEGWKVAMSTLNY
CEEEEEEEECCCCEEECHHHHHCCCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHCCC
ERLNIGTILFTVERLIRELSINNDQLFNTAEEIVALKSFYKRILERLKKGYIAGPEAAVI
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
KLVASEAIQRVYENAMANMGIEGLVMEREPGFRPEIAYGFLASRSITIAGGTSEILRNLL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHH
GEVVLGLPKG
HHHHHCCCCC
>Mature Secondary Structure 
SKNEDELEEYRIKVREWIRNNVPEEIRAKGDMAPPDVLREWQRRIYEAGYLGVSWPKEY
CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
GGWGENPIKEIIVREEFAKAGVPYATVGLGVSVVGPAIILNGTEEQKKKHIRRILTAEDV
CCCCCCHHHHHHHHHHHHHCCCCEEHHHCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHH
WCQGFSEPQAGSDLAGIKTKAEDKGEYFLVNGQKIWSSYAHLANYCLLLTRTGDVSERHK
HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHEEEEECCCCHHHHHC
GLTMLIVDMKSEGIRVSPIKQITGRSEFNTVYFNNVKVPKENVVGKIGEGWKVAMSTLNY
CEEEEEEEECCCCEEECHHHHHCCCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHCCC
ERLNIGTILFTVERLIRELSINNDQLFNTAEEIVALKSFYKRILERLKKGYIAGPEAAVI
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
KLVASEAIQRVYENAMANMGIEGLVMEREPGFRPEIAYGFLASRSITIAGGTSEILRNLL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHH
GEVVLGLPKG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]