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The map label for this gene is dgoD [H]

Identifier: 15898101

GI number: 15898101

Start: 1083623

End: 1084759

Strand: Reverse

Name: dgoD [H]

Synonym: SSO1258

Alternate gene names: 15898101

Gene position: 1084759-1083623 (Counterclockwise)

Preceding gene: 15898102

Following gene: 15898099

Centisome position: 36.25

GC content: 35.44

Gene sequence:

>1137_bases
ATGAAAGTTAAGCCTTTTTCTTTATCCATCCCCTTTAATACTGAACCTCCCTCTGATTGGAAGGATGCGTGGGATGTGCA
GCTCTACGTTAAAGTGGAAGATGAAAAAGATTACGGTTGGGGGGAGGCATTAGTAGCGGGAAGTGGAATTATAAACTCTT
ACCTCTCGATTATAAATGACATTGCAATACCACTTTTATCTAGAGTAGAATTAAGCGAACCCATAGACGTTAGGACTATT
TTAGAGAAAATTCTTTTTAGTGCTGGAAATTGCGGAGTGGTTTCTGGGGCCATAAGTGCAGTGGAAATGGCATTATGGAG
TTTAAAAGCTAGAAAAAGTAATGTAGAATTGTATAAATTAATTGGAGATAAAATCAGAGATTCAGTGAAAGTATACGCTA
GCTTTCCCAGGTTTGGTAAAATTGATGATGTTTTGATTGCTACGAGAAAATCTTTAGAAAGAGGTTTTGATCTGGTTAAA
CTTCATCAATCTCCTTCAACTGTTTTAGCTGCGGTAAAAGCTATAAGAGAGAATTACAAGGAAGTTAAAATAGCGATTGA
CCTTAATTCTCCTTTTGATAATCTAGATGTGGCTAAGGAGTTCGTAGATAAGGTTCATAAATATGAAATTGAATGGATTG
AGGAACCGTTATGGCCTCCTAATGATTATGATCTACTCTCTAAGCTTACTGAGTTTTCTCCTATACCAATAGCTGCTGGG
GAGAACGAGTATTCTTTATACGGTTTTAAGAAATTAATTGAAAGCGGCATAACATATCTACAACCAGATATTGCTAAGGT
TGGAGGGGTTACAAAATTTCTCGAAATATTAGATCTGGCATCTAAGTATAAGGTGAGAGTCTTGCCTCACGATAGACCAG
ACGCTTCCCCCATATCTTTAATATACACGTTAAATATCGGACTAGTAAAGAGTCAAATAGAGATGGTAGAGTATACAATT
GCGGATTTTCCTAATGATCTATTTTATTCCTTGCCTAAATTCAAAGATGGTTACATATCTCCTCCAGAAAACCTTGAAGT
TGTAGAGAGAAATATAGAAAAATACAGTTATAAAAATAGGCTCAGAATATTACATTTCAGTGATTTAGAGAATAAGCTAA
TGAGGAAAATAACATAA

Upstream 100 bases:

>100_bases
TCAACTATACGATTAGGGTTGCCAACGGTAGGTTAACTTCAGCGGAGATATTACAACATGAGGAGTTCTCTCCAATAAAG
CTTTACATAAGTGCTTAAAG

Downstream 100 bases:

>100_bases
GGGAATTGCAAGAGAGTGTAGACAACGATTTCATTCATTTGAAACTTAGTTTAAATTCCTTCAAGTCACTTTCATTAAAT
ACTTTCATTATGTATCAAAG

Product: mandelate racemase/muconate lactonizing family protein

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKVKPFSLSIPFNTEPPSDWKDAWDVQLYVKVEDEKDYGWGEALVAGSGIINSYLSIINDIAIPLLSRVELSEPIDVRTI
LEKILFSAGNCGVVSGAISAVEMALWSLKARKSNVELYKLIGDKIRDSVKVYASFPRFGKIDDVLIATRKSLERGFDLVK
LHQSPSTVLAAVKAIRENYKEVKIAIDLNSPFDNLDVAKEFVDKVHKYEIEWIEEPLWPPNDYDLLSKLTEFSPIPIAAG
ENEYSLYGFKKLIESGITYLQPDIAKVGGVTKFLEILDLASKYKVRVLPHDRPDASPISLIYTLNIGLVKSQIEMVEYTI
ADFPNDLFYSLPKFKDGYISPPENLEVVERNIEKYSYKNRLRILHFSDLENKLMRKIT

Sequences:

>Translated_378_residues
MKVKPFSLSIPFNTEPPSDWKDAWDVQLYVKVEDEKDYGWGEALVAGSGIINSYLSIINDIAIPLLSRVELSEPIDVRTI
LEKILFSAGNCGVVSGAISAVEMALWSLKARKSNVELYKLIGDKIRDSVKVYASFPRFGKIDDVLIATRKSLERGFDLVK
LHQSPSTVLAAVKAIRENYKEVKIAIDLNSPFDNLDVAKEFVDKVHKYEIEWIEEPLWPPNDYDLLSKLTEFSPIPIAAG
ENEYSLYGFKKLIESGITYLQPDIAKVGGVTKFLEILDLASKYKVRVLPHDRPDASPISLIYTLNIGLVKSQIEMVEYTI
ADFPNDLFYSLPKFKDGYISPPENLEVVERNIEKYSYKNRLRILHFSDLENKLMRKIT
>Mature_378_residues
MKVKPFSLSIPFNTEPPSDWKDAWDVQLYVKVEDEKDYGWGEALVAGSGIINSYLSIINDIAIPLLSRVELSEPIDVRTI
LEKILFSAGNCGVVSGAISAVEMALWSLKARKSNVELYKLIGDKIRDSVKVYASFPRFGKIDDVLIATRKSLERGFDLVK
LHQSPSTVLAAVKAIRENYKEVKIAIDLNSPFDNLDVAKEFVDKVHKYEIEWIEEPLWPPNDYDLLSKLTEFSPIPIAAG
ENEYSLYGFKKLIESGITYLQPDIAKVGGVTKFLEILDLASKYKVRVLPHDRPDASPISLIYTLNIGLVKSQIEMVEYTI
ADFPNDLFYSLPKFKDGYISPPENLEVVERNIEKYSYKNRLRILHFSDLENKLMRKIT

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=308, Percent_Identity=26.9480519480519, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787864, Length=315, Percent_Identity=25.7142857142857, Blast_Score=95, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 42932; Mature: 42932

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKPFSLSIPFNTEPPSDWKDAWDVQLYVKVEDEKDYGWGEALVAGSGIINSYLSIIND
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
IAIPLLSRVELSEPIDVRTILEKILFSAGNCGVVSGAISAVEMALWSLKARKSNVELYKL
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IGDKIRDSVKVYASFPRFGKIDDVLIATRKSLERGFDLVKLHQSPSTVLAAVKAIRENYK
HHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCE
EVKIAIDLNSPFDNLDVAKEFVDKVHKYEIEWIEEPLWPPNDYDLLSKLTEFSPIPIAAG
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEECC
ENEYSLYGFKKLIESGITYLQPDIAKVGGVTKFLEILDLASKYKVRVLPHDRPDASPISL
CCCCHHHHHHHHHHCCCHHCCCHHHHHCCHHHHHHHHHHHHHCEEEECCCCCCCCCCEEE
IYTLNIGLVKSQIEMVEYTIADFPNDLFYSLPKFKDGYISPPENLEVVERNIEKYSYKNR
EEEEECHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LRILHFSDLENKLMRKIT
EEEEEEHHHHHHHHHHCC
>Mature Secondary Structure
MKVKPFSLSIPFNTEPPSDWKDAWDVQLYVKVEDEKDYGWGEALVAGSGIINSYLSIIND
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
IAIPLLSRVELSEPIDVRTILEKILFSAGNCGVVSGAISAVEMALWSLKARKSNVELYKL
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IGDKIRDSVKVYASFPRFGKIDDVLIATRKSLERGFDLVKLHQSPSTVLAAVKAIRENYK
HHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCE
EVKIAIDLNSPFDNLDVAKEFVDKVHKYEIEWIEEPLWPPNDYDLLSKLTEFSPIPIAAG
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEECC
ENEYSLYGFKKLIESGITYLQPDIAKVGGVTKFLEILDLASKYKVRVLPHDRPDASPISL
CCCCHHHHHHHHHHCCCHHCCCHHHHHCCHHHHHHHHHHHHHCEEEECCCCCCCCCCEEE
IYTLNIGLVKSQIEMVEYTIADFPNDLFYSLPKFKDGYISPPENLEVVERNIEKYSYKNR
EEEEECHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LRILHFSDLENKLMRKIT
EEEEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA