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The map label for this gene is ydhC [H]

Identifier: 15898099

GI number: 15898099

Start: 1080247

End: 1080885

Strand: Reverse

Name: ydhC [H]

Synonym: SSO1255

Alternate gene names: 15898099

Gene position: 1080885-1080247 (Counterclockwise)

Preceding gene: 15898101

Following gene: 15898098

Centisome position: 36.12

GC content: 35.52

Gene sequence:

>639_bases
ATGTCACTATCACAAATAGCTTACGAGAAAATTCTGGAATACATAATTACCGGCAAATACAAACCCGGCAATACTTTGAA
AGAAGAGGAGCTTGCGTCATTACTTAAGATTAGTAGAACCCCAATTAGGGAAGCCTTAGCTAGGTTAGAAAAGGAGGGAG
TAATAGTAAAGAACGGTAAATCGTTCACTGTAATACCGTTAACAGAAAGTGATATTCTTCAACTCTACGAGGTTAGAATA
AACTTAGAATCCCTATCAGCTAAACTAGCCGCAATAAGAGCTAGCCAAGATGAGATTAACAAGATCATAAATGTTTTAAA
CGAGATAAGAGGGTCAGCAAATGCTGATCCATTAACCTTAGCTAATTTAAACGGTAACTTACATAGGGCAATAGCTGAGG
CATCACATAATAAATACATTGTGGATATTTTGGATAGTATTAGATTGAAGCTAAAAATTGTTAGGATAACCTTGTTTACC
AGCTTTCAGAGAAGAGATGAGGAGTTTAGGGAACATGAAAGTATAGTAATAGCCATAAAGAATCGCAGTCCAGATTTGGC
TTATGACATGATGCGAATGCATGAGGAGAAAGTTTTAGATTATGTAAAGCAAAATATACTGCCAGTAATGTTTAGATAA

Upstream 100 bases:

>100_bases
ATACAATTCGTATTTACTATTCAGTAAAAATATTTCTTTCATGTATACTTAAAGTGACTCAATTGGTAACACTTATAAGT
TTACTATAGAAACATTTCAT

Downstream 100 bases:

>100_bases
GATTTTATGCTCAACCTCCATTATTAACTTATGATAAGGAGATCTCAGTTATACGTCCCTGCAACTTCCGAAAAGATGAT
AAGGAAATCGGTTGAACTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNGKSFTVIPLTESDILQLYEVRI
NLESLSAKLAAIRASQDEINKIINVLNEIRGSANADPLTLANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFT
SFQRRDEEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLDYVKQNILPVMFR

Sequences:

>Translated_212_residues
MSLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNGKSFTVIPLTESDILQLYEVRI
NLESLSAKLAAIRASQDEINKIINVLNEIRGSANADPLTLANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFT
SFQRRDEEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLDYVKQNILPVMFR
>Mature_211_residues
SLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNGKSFTVIPLTESDILQLYEVRIN
LESLSAKLAAIRASQDEINKIINVLNEIRGSANADPLTLANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTS
FQRRDEEFREHESIVIAIKNRSPDLAYDMMRMHEEKVLDYVKQNILPVMFR

Specific function: Repressor For The Uxurba Operon. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=219, Percent_Identity=29.2237442922374, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24276; Mature: 24144

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNGK
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCC
SFTVIPLTESDILQLYEVRINLESLSAKLAAIRASQDEINKIINVLNEIRGSANADPLTL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEE
ANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDEEFREHESIVIAIK
EECCCHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEEEE
NRSPDLAYDMMRMHEEKVLDYVKQNILPVMFR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVIVKNGK
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCC
SFTVIPLTESDILQLYEVRINLESLSAKLAAIRASQDEINKIINVLNEIRGSANADPLTL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEE
ANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDEEFREHESIVIAIK
EECCCHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEEEE
NRSPDLAYDMMRMHEEKVLDYVKQNILPVMFR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]